View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12049_high_21 (Length: 283)

Name: NF12049_high_21
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12049_high_21
NF12049_high_21
[»] chr5 (18 HSPs)
chr5 (1-267)||(39464379-39464645)
chr5 (72-260)||(39470673-39470861)
chr5 (72-226)||(39486564-39486718)
chr5 (72-224)||(39483361-39483513)
chr5 (72-257)||(39460318-39460503)
chr5 (72-225)||(39451100-39451256)
chr5 (72-182)||(39454782-39454892)
chr5 (72-258)||(39472103-39472289)
chr5 (72-225)||(39475606-39475762)
chr5 (1-62)||(39486755-39486816)
chr5 (1-56)||(39470581-39470636)
chr5 (8-65)||(39451287-39451344)
chr5 (17-62)||(39483547-39483592)
chr5 (1-62)||(39460537-39460598)
chr5 (17-57)||(39472325-39472365)
chr5 (1-56)||(39458118-39458173)
chr5 (23-62)||(43312380-43312419)
chr5 (17-62)||(39475796-39475841)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39464379 - 39464645
Alignment:
Q  1 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtggtgacattgaggttagagacggcttgtttgacgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39464379 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtggtgacatcgaggttagagacggcttgtttgacgttt 39464478  T
Q  101 ggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctggaaggttgatgacattaagagaatcagata 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464479 ggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctggaaggttgatgacattaagagaatcagata 39464578  T
Q  201 tgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464579 tgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttat 39464645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 39470673 - 39470861
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 171  Q
    ||||||| ||||  |||||||||||||||| ||| ||||| || ||||||||||||||  | |||||||||||||||||| || ||| ||||||||||||    
T  39470673 tgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaacagaaacttctgg 39470772  T
Q  172 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaaga 260  Q
    ||||||||||||||  ||||||||||| |||||||||||||||| ||||||||| |||||||| || ||||||| ||| ||||||||||    
T  39470773 aaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaaga 39470861  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 39486718 - 39486564
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 171  Q
    ||||||| || || |||||||||||||||||||| ||||| |||||||||||||||||  |  ||| ||| || | | || |||||||||||  ||||||    
T  39486718 tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg 39486619  T
Q  172 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcg 226  Q
    |||||||||||| |  |||||||| || ||||||| |||||| ||||||||||||    
T  39486618 aaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcg 39486564  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 39483513 - 39483361
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 171  Q
    ||||||| ||||| |||||| | | ||||||||| ||||| |||||||||||||| || || ||| || ||||  || || |||||||| ||  ||||||    
T  39483513 tgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgggggaagataacattctgg 39483414  T
Q  172 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacat 224  Q
    ||||||||| ||||||||| ||||| | ||||||| |||||||| ||||||||    
T  39483413 aaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat 39483361  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 39460503 - 39460318
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggttt-ggggaagagaaacttctg 170  Q
    |||| ||||| ||||||||||||||||||| ||| ||||| || |||| |||  |||||  ||||  ||| || || |||| ||||||||||||||||||    
T  39460503 tgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttc-gatgtttgggggaagagaaacttctg 39460405  T
Q  171 gaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgacta 257  Q
    ||||||||||||  |  |||||||||||  ||||||  ||||||||||  |||||||||||||  || | ||||||||| |||||||    
T  39460404 gaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgacta 39460318  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 39451256 - 39451100
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattg---cggaacctggatcagaggtttggggaagagaaacttc 168  Q
    |||||||||| |||||||||||||| |||||||| ||||| || ||||||||   ||| |   || |||||||||  | | || | ||||||||||||||    
T  39451256 tgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttc 39451157  T
Q  169 tggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatc 225  Q
    ||||||||||||||  || |||||||| || || |||| ||||||||||| ||||||    
T  39451156 tggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatc 39451100  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 39454892 - 39454782
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 171  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||| |||||  ||| | |||| |||||| || | || ||||||||||   ||||||    
T  39454892 tgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctgg 39454793  T
Q  172 aaggttgatga 182  Q
    |||||||||||    
T  39454792 aaggttgatga 39454782  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 39472289 - 39472103
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 171  Q
    |||||||||| ||  ||||||||||||||||||| ||||| || ||||| ||  |||| | || |||| |||| | | || ||| |||||||  ||||||    
T  39472289 tgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctgg 39472190  T
Q  172 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaa 258  Q
    |||||||||||  |  || ||||| || || |||| |||||||||||||||||||| ||||| | | ||||||| |||||| |||||    
T  39472189 aaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaa 39472103  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 39475762 - 39475606
Alignment:
Q  72 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcgga---acctggatcagaggtttggggaagagaaacttc 168  Q
    ||||||| ||||| |||||||| ||||||||||| ||||| || ||||||||  |||| |  ||   ||||||||| | | || ||||||||||||||||    
T  39475762 tgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttc 39475663  T
Q  169 tggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatc 225  Q
    ||||||||||||||  || ||||| || || || |||| ||||||||||| ||||||    
T  39475662 tggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatc 39475606  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39486816 - 39486755
Alignment:
Q  1 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 62  Q
    ||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  39486816 agggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaagg 39486755  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39470581 - 39470636
Alignment:
Q  1 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaa 56  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  39470581 agggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaa 39470636  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 39451344 - 39451287
Alignment:
Q  8 gaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtgg 65  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||    
T  39451344 gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtgg 39451287  T

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Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 39483592 - 39483547
Alignment:
Q  17 ttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 62  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  39483592 ttggcaacatcaatcatggtggtgcagaacatgtcaacaacgaagg 39483547  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39460598 - 39460537
Alignment:
Q  1 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 62  Q
    |||||| |||||||| ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  39460598 agggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaagg 39460537  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 39472365 - 39472325
Alignment:
Q  17 ttggcaacatcaatcatgttggtgcagaacatgtcaacaac 57  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39472365 ttggcaacatcaatcatgtttgtgcagaacatgtcaacaac 39472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39458118 - 39458173
Alignment:
Q  1 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaa 56  Q
    |||||| |||||||| ||  |||||||||||||| |||||||||||||||||||||    
T  39458118 agggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaa 39458173  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 43312380 - 43312419
Alignment:
Q  23 acatcaatcatgttggtgcagaacatgtcaacaacgaagg 62  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43312380 acatcaatcatggtggtgcagaacatgtcaacaacgaagg 43312419  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 39475841 - 39475796
Alignment:
Q  17 ttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 62  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||    
T  39475841 ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaagg 39475796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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