View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12049_high_27 (Length: 239)
Name: NF12049_high_27
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 49305166 - 49305401
Alignment:
| Q |
1 |
gggcatgtcgtgacatttcctcctggagcgaggcctcaagggtgtgaatatattgctgcaaaggaaaaacaaagcattaaccaaccaaattaatctctgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49305166 |
gggcatgtcgtgacatttcctcctggagcgaggcctcaagggtgtgaatatattgctgcaaaagaaaaacaaagcattaaccaaccaaattaatctctgg |
49305265 |
T |
|
| Q |
101 |
aatatgatcattaagaccaatactttgcagatacaagaaaaccacacacaacgacatcaatgttcaaaaataaaaatagacattgtacatcaatcttgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49305266 |
aatatgatcattaagaccaatactttgcacatacaagaaaactacacacaacgacatcaatgttcaaaaataaaaatagacattgtacatcaatcttgcc |
49305365 |
T |
|
| Q |
201 |
cgttaaacaaaatactactataagatgatgtccatc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49305366 |
cgttaaacaaaatactactataagatgatttccatc |
49305401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University