View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_29 (Length: 227)
Name: NF12049_high_29
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6249266 - 6249053
Alignment:
| Q |
1 |
tctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249266 |
tctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagc |
6249167 |
T |
|
| Q |
101 |
taagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggacatggatcacatgatttgtattctttattttttctaaagagtgataccatag |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249166 |
taagccttcaaaattaaagggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatag |
6249067 |
T |
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| Q |
201 |
tctatctctctgtg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
6249066 |
tctatctctctgtg |
6249053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 43047422 - 43047209
Alignment:
| Q |
1 |
tctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43047422 |
tctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaactgatggaattctctgttttacatagacaacaatggaagc |
43047323 |
T |
|
| Q |
101 |
taagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggacatggatcacatgatttgtattctttattttttctaaagagtgataccatag |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43047322 |
taagccttcaaaattaaaaggagaatatggatgaaatgaaatgaaggagatggatcacatgatttgtattcttcattttttctaaagagtgataccatag |
43047223 |
T |
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| Q |
201 |
tctatctctctgtg |
214 |
Q |
| |
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||| |||||||||| |
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| T |
43047222 |
tctgtctctctgtg |
43047209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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