View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_1 (Length: 597)
Name: NF12049_low_1
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 43714146 - 43714723
Alignment:
| Q |
17 |
actgtcaacaactaacacacgtggagattgataacaaccttataaccggtacaataccttccgaattaggaaaccttgggaatctaacattgttgttttt |
116 |
Q |
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| T |
43714146 |
actgtcaacaactaacacacgtggagattgataacaaccttataaccggtacaataccttccgaattaggaaaccttgggaatctaacattgttgttttt |
43714245 |
T |
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| Q |
117 |
gtggcataataggttacaaggtaatataccttcaactctttccaattgtcaaaaccttgaagctattgatctgtcacagaatttgttaactggtcccata |
216 |
Q |
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| T |
43714246 |
gtggcataataagttacaaggtaatataccttcaactctttccaattgtcaaaaccttgaagctattgatctgtcacagaatttgttaactggtcccata |
43714345 |
T |
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| Q |
217 |
ccaaaaggtatatttcagcttcaaaatctcaacaagcttttgcttctctctaataatctctctggtaaaattccctctcagattgggaattgttcttctc |
316 |
Q |
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| T |
43714346 |
ccaaaaggtatatttcagcttcaaaatctcaacaagcttttgcttctctctaataatctctctggtaaaattccctctcagattgggaattgttcttctc |
43714445 |
T |
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| Q |
317 |
ttattcgcttccgagcgaataataacaacattactggttttattccttctcagattggtaatctcaagaatttgaatttccttgacctagggagtaatag |
416 |
Q |
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| T |
43714446 |
ttattcgcttccgagcgaataataacaacattactggttttattccttctcagattggtaatctcaagaatttgaatttccttgacctagggagtaatag |
43714545 |
T |
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| Q |
417 |
gattgcagggattatcccggaagaaatctccggttgccggaatcttactttcttggatttgcattcaaattacatcgccggagccttgccggatagtttg |
516 |
Q |
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| T |
43714546 |
gattgaagggattatcccggagaaaatctccggttgccggaatcttactttcttggatttgcattcaaattacatcgccggagccttgccggatagtttg |
43714645 |
T |
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| Q |
517 |
agcgagctggtttcacttcaatttcttgatttctccgataacatgatcgaaggtgcattgaatccttctctctgctcc |
594 |
Q |
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| T |
43714646 |
agcgagctggtttcacttcaatttcttgatttctccgataacatgatcgaaggtgcattgaatccttctctcggctcc |
43714723 |
T |
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