View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_11 (Length: 474)
Name: NF12049_low_11
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 38 - 461
Target Start/End: Original strand, 43101796 - 43102227
Alignment:
| Q |
38 |
catcacattaagcatgcataggtgggaaa----------attttgaaaattggagaccgaaaccaggaatctaaaaatagtagccaattgatatatcttt |
127 |
Q |
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| T |
43101796 |
catcacattaagcatgcataggtgggaaattttttaaatattttgaaaattggagaccgaaaccaggaatctaaaaatagtagccatttgatatatcttt |
43101895 |
T |
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| Q |
128 |
caaactaaacttgatctaatggtgtaaaagtgcacaaccaacagacccttcatccagagagagtaaatgttaaaagacaactacctcttgatgcaacatt |
227 |
Q |
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| T |
43101896 |
caaactaaacttgatctaatggtgtaaaagtgcacaaccaacagacccttcatccagag--agtaaatgttaaaagacaactacctcttgatgcaacatt |
43101993 |
T |
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| Q |
228 |
atcctgaaaagctgtaaatgaaataagaccaactttttacaatgaccgaagtaacaggaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaa |
327 |
Q |
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| T |
43101994 |
atcctgaaaagctgtaaatgaaataagaccaactttttacaatgaccgaagtaacagaaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaa |
43102093 |
T |
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| Q |
328 |
gagcaaatggaaaggaccatgtcaaacaatcccagattatcccatcttcaatgggaggacaacatgccctgggtagtttagctagacatctggggcagag |
427 |
Q |
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| T |
43102094 |
gagcaaatggaaaggaccatgtcaaacaatcccagattatcccatcttcaatgggaggactacatgccctgggtagtttagctagacatctggggcagag |
43102193 |
T |
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| Q |
428 |
gaatcaaatgatggtagaagccaccccttggtct |
461 |
Q |
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| T |
43102194 |
gaatcaaatgatggtagaagccaccccttggtct |
43102227 |
T |
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