View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_13 (Length: 456)
Name: NF12049_low_13
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 38 - 410
Target Start/End: Original strand, 34264009 - 34264381
Alignment:
| Q |
38 |
attatagtgaattgtgagaaccacaatttttgttctacaatgaggtacgagcaccattaatcacagacactataatgtcatagcatagcccgcggctcca |
137 |
Q |
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| T |
34264009 |
attatagtgaattgtgagaaccacaaattttgttctagaatgaggtacgagcaccattaatcacaaacactataatgtcatagcatagcccgcggctcca |
34264108 |
T |
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| Q |
138 |
accatgggcagtagtactagtagaacagttatatgatactaccaaccaactactatcattatttatcagtactaactttgctttggactatggtattgta |
237 |
Q |
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| T |
34264109 |
accataggcaatagtactagtagaacagttatatgatactaccaaccaactactatcattatttatcagtactaactttgctttggactatggtattgta |
34264208 |
T |
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| Q |
238 |
agagaattaaatatttaatgggattattaggaaggatagattaagccacggtcctactttggatatgcagtggttgtaccattaatgaatgttacctttt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34264209 |
agagaattaaatatttaatgggattattaggaaggatagattaagccacggtcctactttggatatgcagtggttgtaccattaatgaatgttacctttt |
34264308 |
T |
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| Q |
338 |
gcataatccactctactttcttcttctaatctttttcatgctaacttcgtgtacttcatcatacctcagcaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34264309 |
gcataatccactctactttcttcttctaatctttttcatgctaacttcgtgtccttcatcatacctcagcaag |
34264381 |
T |
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