View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_14 (Length: 453)
Name: NF12049_low_14
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Complemental strand, 43715134 - 43714694
Alignment:
| Q |
5 |
ggagaagcagagagaaggattccctgagagaacgttcaatggaagcttctcgaagaacggtgtgtttggaacgtggcctgagaatttgttgaatgagata |
104 |
Q |
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| T |
43715134 |
ggagaagcaaagagaaggattccctgagagaacgttcaatggaagcttctcgaagaacggtgtgtttggaacgtgacctgagaatttgttgaatgagata |
43715035 |
T |
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| Q |
105 |
ttgagaacaacgagattttccaatccggcaagataatcaaggtttccggtgagaatgttgtgagataaatcaagaactccgagttttgttaagcttgaaa |
204 |
Q |
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| T |
43715034 |
ttgagaacaacgagattttccaatccggcaagataatcaaggtttccggtgagaatgttgtgagataaatcaagaactccgagttttgttaagcttgaaa |
43714935 |
T |
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| Q |
205 |
actcgtgaggaatcttgccggaaagttggtttgtgctcagatttaaagctatttccagtgccggaatgtctcctatggtgctaggaatttcaccggagag |
304 |
Q |
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| T |
43714934 |
actcgtgaggaatcttgccggaaagttggtttgtgctcagatttaaagctatttccagtgccggaatgtctcctatggtgctaggaatttcaccggagag |
43714835 |
T |
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| Q |
305 |
ttgattgctactgagatcaagtaactgtaacttctcacacgaaccaagcttcatcggaattttaccggagattcgattctgccggagaataagttttgtt |
404 |
Q |
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| T |
43714834 |
ttgattgctgctgagatcaagtaactgtaacttctcacatgaaccaagcttcatcggaattttaccggagattcgattctgccggagaataagttttgtt |
43714735 |
T |
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| Q |
405 |
agagcagcaagggagccgagagaaggattcaatgcaccttc |
445 |
Q |
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| T |
43714734 |
agagcagcaagggagccgagagaaggattcaatgcaccttc |
43714694 |
T |
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