View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_15 (Length: 432)
Name: NF12049_low_15
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 23801643 - 23801234
Alignment:
| Q |
1 |
tgaagggaatatattccaactaattaagaacctttggttttagttggtccatttttgttcgtattttgtgggggatccatcttaaacaatcacgttctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23801643 |
tgaagggaatatattccaactaattaagaacctttggttttagttggtccatttttgttcgtattttgtgggggatccatcttaaacaatcacgttctta |
23801544 |
T |
|
| Q |
101 |
ttcgagttgacttggttgtcatgcacattgaaatatagaaacataaagtgaatatagaaatattaaattattaaaaataagctataatgtggttgggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23801543 |
ttcgagttgacttggttgtcatgcacattgaaatatagaaacataaagtgaatatagaaatattaaattattaaaaataagctataatgtggttgggttg |
23801444 |
T |
|
| Q |
201 |
gtagacattcgatttttaaagccaaaggctcaatgtaac---ttaattaggttttgaaataattcatcaaatagcttttatagataagactgatcgagtt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23801443 |
gtagacattcgatttttaaagccaaaggctcaatgtaacttattaattaggttttgaaataattcatcaaatagcttttatagataagactgatcgagtt |
23801344 |
T |
|
| Q |
298 |
cacgattagtttttgataggaacaaataacgattcgttagttagatccnnnnnnnnnnnnnnnnagtaaataccattcatttagacaaaacttggacgca |
397 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
23801343 |
cacgattagtttttgataggaacaaataacgatttgttagttagatcc----------ttttttagtaaataccattcattcagacaaaacttggacgca |
23801254 |
T |
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| Q |
398 |
tttcattcttagatgatttt |
417 |
Q |
| |
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|||||||||||||||||||| |
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| T |
23801253 |
tttcattcttagatgatttt |
23801234 |
T |
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