View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_16 (Length: 414)
Name: NF12049_low_16
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 172 - 401
Target Start/End: Complemental strand, 2288619 - 2288390
Alignment:
| Q |
172 |
tggacgttaccaaaagacaatggttgcattcctgatggtactataatttgcagaacaactaagcacactctctccgtaagatatggagcaaatgatctta |
271 |
Q |
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| T |
2288619 |
tggacgttaccaaaagacaatggttgcattcctgatggtactataatttgcagaacaactaagcacactctctccgtaagatatggagcaaatgatctta |
2288520 |
T |
|
| Q |
272 |
tttgtggatggattgttacagcctagaggtctattagattgattgctttccagttttctaattaaagaactatgttttatgctttttgattaagcttgat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288519 |
tttgtggatggattgttacagcctagaggtctattagattgattgctttccagttttctaattaaagaactatgttttatgctttttgattaagcttgat |
2288420 |
T |
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| Q |
372 |
tatgcctatatgattgttttggatatacct |
401 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2288419 |
tatgcctatatgattgttttggatatacct |
2288390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2288769 - 2288644
Alignment:
| Q |
1 |
tgtcgaacctaatatcgctggttatcacgtggtcactaagtaactatacaaaggtgaaagagttgatgagattacagaaacagttgaaagatgggtatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2288769 |
tgtcgaacctaatatcgctggttatcacgtggtcactaagtaactatacaaaggtgaaagagttgatgagattacagaaacagttgaaagattggtatct |
2288670 |
T |
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| Q |
101 |
caccgacatacttatgaaatttaact |
126 |
Q |
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| T |
2288669 |
caccgacatacttatgaaatttaact |
2288644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 670502 - 670434
Alignment:
| Q |
276 |
tggatggattgttacagcctagaggtctattagattgattgctttccagttttctaattaaagaactat |
344 |
Q |
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| T |
670502 |
tggatgggttgctagagcctagaggtctattagattacatgctttccagttttctaattaaagaactat |
670434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 2288378 - 2288332
Alignment:
| Q |
347 |
tttatgctttttgattaagcttgattatgcctatatgattgttttgg |
393 |
Q |
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| T |
2288378 |
tttatgctttttgattaagcttgattatgcctatatgattgtattgg |
2288332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 670720 - 670605
Alignment:
| Q |
58 |
aagagttgatgagattacagaaacagttgaaagatgggtatctcaccgacatacttatgaaattta--actcccgttcatttttattatgaatgaactat |
155 |
Q |
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||||||| |||||||| |||||| |||||||| || ||||| | ||| || ||| | ||||| || ||||| |||| ||||||| ||||||||||||| |
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| T |
670720 |
aagagttaatgagattgcagaaatagttgaaa-attggtattttaccaacctacaaaggaaatatattactccagttcgtttttataatgaatgaactat |
670622 |
T |
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| Q |
156 |
ttaaagtgggcttgttt |
172 |
Q |
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|||||||||| |||||| |
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| T |
670621 |
ttaaagtgggtttgttt |
670605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 14470304 - 14470270
Alignment:
| Q |
174 |
gacgttaccaaaagacaatggttgcattcctgatg |
208 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
14470304 |
gacgttaccaaaagacaatggttgcattcttgatg |
14470270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 670579 - 670535
Alignment:
| Q |
185 |
aagacaatggttgcattcctgatggtactataatttgcagaacaa |
229 |
Q |
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|||||||||||| ||||||| |||| ||||||| ||||||||||| |
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| T |
670579 |
aagacaatggttacattccttatggaactataacttgcagaacaa |
670535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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