View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_22 (Length: 315)
Name: NF12049_low_22
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 4243746 - 4243469
Alignment:
| Q |
17 |
gacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttc |
116 |
Q |
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| T |
4243746 |
gacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttc |
4243647 |
T |
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| Q |
117 |
tgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243646 |
tgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttat |
4243547 |
T |
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| Q |
217 |
tggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacact |
294 |
Q |
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| T |
4243546 |
tggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacact |
4243469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 6186790 - 6186525
Alignment:
| Q |
29 |
gaaacccctttgcaaacaaggttgaataaacttacatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgat |
128 |
Q |
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| T |
6186790 |
gaaacacctttgcaaacaaggttgaataagctaacatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgat |
6186691 |
T |
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| Q |
129 |
atttcaccgggaacacaaagactgataacggagttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttattggaattattgc |
228 |
Q |
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| T |
6186690 |
atttcaccgggaatacaaagactgatgccggagttagagaattcaatggtagaaagacgagttttgatgatgtgatgaatgcaattattggaattattgc |
6186591 |
T |
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| Q |
229 |
tgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacact |
294 |
Q |
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| T |
6186590 |
tgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacact |
6186525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 39951752 - 39951698
Alignment:
| Q |
236 |
gttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattga |
290 |
Q |
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| T |
39951752 |
gttacaatcgtcgtcgttgctgttcccgagggtttaccattagctgtaacattga |
39951698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
232 |
tgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattga |
290 |
Q |
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||||||||| ||||| ||||||||| | || || |||||||| |||||||||||||||| |
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| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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