View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_23 (Length: 306)
Name: NF12049_low_23
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_23 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 13101260 - 13100980
Alignment:
| Q |
14 |
caagtagtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttct |
113 |
Q |
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| T |
13101260 |
caagtagtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttct |
13101161 |
T |
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| Q |
114 |
tactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttatcttctcatcataagctg |
213 |
Q |
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| T |
13101160 |
tactattgtttgtcctatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaac-ctttctgtggttttgcttttatcttctcatcataagctg |
13101062 |
T |
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| Q |
214 |
ctcttctatccttatcggagagtatactccatgcctctgaaataagcttaaaggccccatcagatccgatggacttgttctt |
295 |
Q |
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| T |
13101061 |
ctcttctatccttatcagacagtatactccatgcctatgaaataagcttaaaggccccatcagatccgatggacttgttctt |
13100980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 20548975 - 20549255
Alignment:
| Q |
14 |
caagtagtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttct |
113 |
Q |
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| T |
20548975 |
caagtagtccaaaatgtggattttgatgcattggcagaggatgaagtgggttctttagccatattcttatgactctttccgcttgaaggcgttttctttt |
20549074 |
T |
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| Q |
114 |
tactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttatcttctcatcataagctg |
213 |
Q |
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| T |
20549075 |
tactgttgttagccccgtttgccgtcgcttttgtcgatgaaccaccaaaaatggttgaac-ctttctgtggttttgcttttatcttcgcatcataggctg |
20549173 |
T |
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| Q |
214 |
ctcttctatccttatcggagagtatactccatgcctctgaaataagcttaaaggccccatcagatccgatggacttgttctt |
295 |
Q |
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| T |
20549174 |
ctcttttatccttatcggacagtatactccatgcctctgaaataagcccaaacgccccatcggatccgctggacttgttctt |
20549255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 13141152 - 13141263
Alignment:
| Q |
97 |
tgaaggtgttttcttcttactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttat |
196 |
Q |
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| T |
13141152 |
tgaaggcgtttttttcttactattgtttgccccatttgccgtcgcttttgtcgatgaaccaccaaaaattgttgaac-ctttatgtggttttgcttttat |
13141250 |
T |
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| Q |
197 |
cttctcatcataa |
209 |
Q |
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| T |
13141251 |
cttctcatcataa |
13141263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 3911 - 4111
Alignment:
| Q |
14 |
caagtagtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttct |
113 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911 |
caagtagtccagaatgatgattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttct |
4010 |
T |
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| Q |
114 |
tactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttatcttctcatcataagctg |
213 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || |
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| T |
4011 |
tactattgtttgtcccatttgccgtcgcttttgtcgatgaaccaccaaaaatggttgaac-ctttctgtggttttgcttttatcttctcatcataagttg |
4109 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
4110 |
ct |
4111 |
T |
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