View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_25 (Length: 272)
Name: NF12049_low_25
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11826251 - 11826432
Alignment:
| Q |
1 |
tatttttcttttggatagaaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccggtaagaggtgcctaaaatgatta |
100 |
Q |
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| T |
11826251 |
tatttttcttttggatagaaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccggtaagaggtgcctaaaatgatta |
11826350 |
T |
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| Q |
101 |
actgtatgtctagtttcatgcctagaacaggttaacttgtactaatatctgannnnnnngtgtcatgctaatcccaaagtta |
182 |
Q |
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| T |
11826351 |
actgtatgtctagtttcatgcctagaacaggttaacttgtactaatatctgatttttttgtgtcatgctaatcccaaagtta |
11826432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 23094186 - 23094356
Alignment:
| Q |
12 |
tggatagaaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccggtaagaggtgcctaaaatgattaactgtatgtct |
111 |
Q |
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| T |
23094186 |
tggatagaaacacattctgttttagatattgatgtgaatagggatataaacctggatattgaaccagtaagaggtgcctaaaatgattaactgtatgtct |
23094285 |
T |
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| Q |
112 |
agtttcatgcctagaacaggttaacttgtactaatatctgannnnnnngtgtcatgctaatcccaaagtta |
182 |
Q |
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| T |
23094286 |
agtttcatgcatagaacaggttaacttgtactaatatctgatttttttgtgtcatgctaatcccaaagtta |
23094356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 11826486 - 11826545
Alignment:
| Q |
203 |
cagacaccaagatagttatgataccactatgtattcattgctgaacccattagatctctg |
262 |
Q |
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| T |
11826486 |
cagacaccaagatagttatgataccactgtgtattcattgctgaacccattagatctctg |
11826545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 23094411 - 23094470
Alignment:
| Q |
203 |
cagacaccaagatagttatgataccactatgtattcattgctgaacccattagatctctg |
262 |
Q |
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| T |
23094411 |
cagacaccaagatagttatgataccactatgtattcattgctgcacccattagatatctg |
23094470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 47347708 - 47347557
Alignment:
| Q |
1 |
tatttttcttttggatagaaaaacattctgttttagatattgatgtcaatagggatataaacctggatattgaaccggtaagaggtgcctaaaatgatta |
100 |
Q |
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| T |
47347708 |
tatttttcttttggatagaaaaacattcttttttagatattgatgtcaatagggatataaacctggatgttgaaccggtaagaggtgcctaaaatgatta |
47347609 |
T |
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| Q |
101 |
actgtatgtctagtttcatgcctagaacaggttaacttgtactaatatctga |
152 |
Q |
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| T |
47347608 |
attgcatgtctagtttcttgcctagagcagattaacttgtactaatatctga |
47347557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 47347464 - 47347405
Alignment:
| Q |
203 |
cagacaccaagatagttatgataccactatgtattcattgctgaacccattagatctctg |
262 |
Q |
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| T |
47347464 |
cagacaccaagatagttatgataccactatgtattcattgctgaacccattagatctctg |
47347405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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