View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_26 (Length: 245)
Name: NF12049_low_26
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 44630767 - 44630542
Alignment:
| Q |
7 |
cgcacgttgaagttggtatcattgtgaaaacaaagcatcta-tatataatgatccactaaagtaattatttgtatgatacaagaaaatacggagaaaatc |
105 |
Q |
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| T |
44630767 |
cgcacgttgaagttggtatcattgtgaaaacaaagcatctaatatataatgatccactaaagtaattatttgtatgatacaagaaaatacggagaaaatc |
44630668 |
T |
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| Q |
106 |
atcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaattataagcta |
205 |
Q |
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| T |
44630667 |
atcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaattataagcta |
44630568 |
T |
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| Q |
206 |
agtagctcactaatgatgctaaaagt |
231 |
Q |
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| T |
44630567 |
actagctcactaatgatgctaaaagt |
44630542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 44652068 - 44651984
Alignment:
| Q |
147 |
caaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctcactaatgatgctaaaagt |
231 |
Q |
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| T |
44652068 |
caaattaaacctgacttggaagagttctttcttccacagttagcttaaattataagctaagtaggtcactaatgctgctaaaagt |
44651984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 44624654 - 44624594
Alignment:
| Q |
98 |
agaaaatcatcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagct |
158 |
Q |
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| T |
44624654 |
agaaaataatcagaattgtcacatcaaattaactaaaagataggatttgaaaaacaaagct |
44624594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 44680940 - 44680885
Alignment:
| Q |
70 |
attatttgtatgatacaagaaaatacggagaaaatcatcagaattgtcacctcaaa |
125 |
Q |
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|||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
44680940 |
attatttgaatgatacaagaaaatacagggaaaatcatgagaattgtcacctcaaa |
44680885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 44652111 - 44652061
Alignment:
| Q |
79 |
atgatacaagaaaatacggagaaaatcatcagaattgtcacctcaaattaa |
129 |
Q |
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| T |
44652111 |
atgatacaagaaaatacagggaaaatcatgagaattgtcacctcaaattaa |
44652061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 44680882 - 44680808
Alignment:
| Q |
153 |
aaagctgacttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctcactaatgatgctaaaagt |
231 |
Q |
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||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| |||| |||||||||| |
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| T |
44680882 |
aaagctgacttggaagagtt----cttccacagttagcttaaattataagctaagtaattcaccaatgctgctaaaagt |
44680808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 44691109 - 44691058
Alignment:
| Q |
162 |
ttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctca |
214 |
Q |
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| T |
44691109 |
ttggaagagttgtttcttcca-agttaacttgacgtataagctaagtagctca |
44691058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 45348796 - 45348836
Alignment:
| Q |
152 |
caaagctgacttggaaaagttgtttcttccacagttagctt |
192 |
Q |
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| T |
45348796 |
caaagctgacgtggaagtgttgtttcttccacagttagctt |
45348836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 45358275 - 45358315
Alignment:
| Q |
152 |
caaagctgacttggaaaagttgtttcttccacagttagctt |
192 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| |
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| T |
45358275 |
caaagctgacgtggaagtgttgtttcttccacagttagctt |
45358315 |
T |
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