View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_28 (Length: 241)
Name: NF12049_low_28
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 46631020 - 46630804
Alignment:
| Q |
16 |
cagtaatttcagaattattcaattccttggaagctgttggtgtagctgttgctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgt |
115 |
Q |
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| T |
46631020 |
cagtaatttcagaattattcaattccttggaagctgttggtgtagctgttgctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgt |
46630921 |
T |
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| Q |
116 |
tgaaacaggagtagttggattttctgttccatttgaaaaattctggtttgtgttacatttttccttctctttttctttgtccttcttccctgtcaagaaa |
215 |
Q |
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| T |
46630920 |
tgaaacaggagtagttggattttctgttccatttgaaaaattctggtttgtgttacatttttccttctctttttctttgtccttcttccctgtcaagaaa |
46630821 |
T |
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| Q |
216 |
tttttgagccatttacc |
232 |
Q |
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| T |
46630820 |
tttttgagccatttacc |
46630804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 15505201 - 15505121
Alignment:
| Q |
66 |
gctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgttgaaacaggagtagttggattttctgttccattt |
149 |
Q |
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| T |
15505201 |
gctgatgatcttctgaaactccatcttcttttctccttt---ggtgttgttgagattggagtagtaggattttcagttccattt |
15505121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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