View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_29 (Length: 239)
Name: NF12049_low_29
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2097079 - 2096855
Alignment:
| Q |
1 |
tagtttccttctgttcttgtaattgcattct--aagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttgaattacattttg |
98 |
Q |
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| T |
2097079 |
tagtttccttctgttcttgtaattgcattctgtaagagtttcctttctatgtaaaagcaataaaggttgtttgaaagagtgtgctttgaattacattttg |
2096980 |
T |
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| Q |
99 |
atatttcagtgaggtttaatctgaacaccaaaaagtagaattctgtgtcctatatgaattgaattgttatacgtgtagtcttctttttctgctagttatt |
198 |
Q |
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| T |
2096979 |
atatttcagtgaggtttaatctgaacaccaaaaagtagaattctgtgtcctatatgaattgaatttttatatgtgtagtcttctttttctgctagttatt |
2096880 |
T |
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| Q |
199 |
tttgctccaacattgcagttgtaat |
223 |
Q |
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| T |
2096879 |
tttgctccaacattgcagttgtaat |
2096855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2071395 - 2071306
Alignment:
| Q |
1 |
tagtttccttctgttcttgtaattgcattctaagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttgaatt |
90 |
Q |
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| T |
2071395 |
tagtttccttctgttcttgtaattgcatattaagagtttcctttgtatgtaaaagcaataaaggttgttcgatagagcgtgctttgaatt |
2071306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2136956 - 2136868
Alignment:
| Q |
1 |
tagtttccttctgttcttgtaattgcattct--aagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttga |
87 |
Q |
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| T |
2136956 |
tagtttccttctgttcttgtaattgcattctgtaagagtttcctatgtatgtaaaagcaataaaggttgtttgaaagagcgtgctttga |
2136868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2103362 - 2103271
Alignment:
| Q |
1 |
tagtttccttctgttcttgtaattgcat--tctaagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttgaatt |
90 |
Q |
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| T |
2103362 |
tagtttccttctgttcttgtaattgcatattgtaagagtttcctttgtatgtaaaagcaataaaggttgttcgaaagagcgtgctttgaatt |
2103271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 2055002 - 2054890
Alignment:
| Q |
2 |
agtttccttctgttcttgtaattgcat--tctaagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttgaattacattttga |
99 |
Q |
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| T |
2055002 |
agttttcttctgttcttgtaattgcatattgtaagagtttcctttctgtgtaaaagcaataaag-ttgtttgaaagagcgtgcattgaattacattttgg |
2054904 |
T |
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| Q |
100 |
tatttcagtgaggt |
113 |
Q |
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|| |||| |||||| |
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| T |
2054903 |
taattcattgaggt |
2054890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 2119459 - 2119322
Alignment:
| Q |
73 |
aagagcatgctttgaattacattttgatatttcagtgaggtttaatctgaaca-ccaaaaagtagaattct-gtgtcctatatgaattgaattgttatac |
170 |
Q |
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|||||||| |||||||||| |||||| ||||||| ||||||||||||| || | |||||||||| |||||| ||| ||||| |||||||||||||| |
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| T |
2119459 |
aagagcattctttgaattatattttggtatttcaatgaggtttaatctcaaaacccaaaaagtataattctagtggcctat---aattgaattgttat-- |
2119365 |
T |
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| Q |
171 |
gtgtagtcttctttttctgctagttatttttgctccaacattg |
213 |
Q |
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| T |
2119364 |
ttatagtgttcttttcctgctagttatttttactccaacattg |
2119322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 2247535 - 2247626
Alignment:
| Q |
125 |
accaaaaagtagaattctgtgtcctatatgaattgaattgttatacgtgtagtcttctttttctgctagttatttttgctccaacattgcagttgta |
221 |
Q |
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| T |
2247535 |
accaaaaaatagaatt--gtgtcctatatgaattgaattgttata--tacagtcttcttat-ctgctagttatttttactccaacattgcagttgta |
2247626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2247443 - 2247531
Alignment:
| Q |
1 |
tagtttccttctgttcttgtaattgcattct--aagagtttcctttgtatgcaaaagcaataaaggttgtttgaaagagcatgctttga |
87 |
Q |
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|||||||||||||||||||||||| |||| | |||||||||||||| ||| |||||| || ||||||||| |||| ||||| |||||| |
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| T |
2247443 |
tagtttccttctgttcttgtaatttcattttgtaagagtttcctttgcatgtaaaagccattaaggttgttggaaaaagcatcctttga |
2247531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 2103049 - 2102996
Alignment:
| Q |
153 |
tgaattgaattgttatacgtgtagtcttctttttctgctagttatttttgctccaa |
208 |
Q |
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||||||||||||||||| | |||||||| |||||||||||||| |||| |||||| |
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| T |
2103049 |
tgaattgaattgttata--tatagtcttcgttttctgctagttacttttactccaa |
2102996 |
T |
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