View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12049_low_3 (Length: 559)

Name: NF12049_low_3
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12049_low_3
NF12049_low_3
[»] chr6 (19 HSPs)
chr6 (301-548)||(22702944-22703191)
chr6 (301-535)||(22697768-22698002)
chr6 (301-548)||(21402011-21402258)
chr6 (300-548)||(29490807-29491061)
chr6 (301-452)||(2817397-2817548)
chr6 (301-452)||(34142781-34142932)
chr6 (301-452)||(34155397-34155548)
chr6 (301-452)||(6727773-6727924)
chr6 (301-452)||(34376464-34376615)
chr6 (301-452)||(24190650-24190802)
chr6 (301-452)||(31983475-31983626)
chr6 (463-535)||(31981832-31981904)
chr6 (463-535)||(34376198-34376270)
chr6 (463-535)||(24191126-24191198)
chr6 (463-535)||(24192223-24192295)
chr6 (475-535)||(34142358-34142418)
chr6 (475-535)||(34154974-34155034)
chr6 (463-535)||(2817901-2817973)
chr6 (463-525)||(6728193-6728255)
[»] chr5 (19 HSPs)
chr5 (301-548)||(17510328-17510575)
chr5 (301-548)||(42019843-42020090)
chr5 (301-548)||(42024623-42024870)
chr5 (332-548)||(17505223-17505439)
chr5 (332-548)||(43579930-43580146)
chr5 (332-543)||(41858861-41859070)
chr5 (332-441)||(41853846-41853955)
chr5 (332-452)||(1413100-1413220)
chr5 (332-452)||(36254517-36254637)
chr5 (300-452)||(24770600-24770752)
chr5 (301-428)||(26709712-26709839)
chr5 (301-428)||(26979446-26979573)
chr5 (370-452)||(24776124-24776206)
chr5 (463-535)||(1413806-1413878)
chr5 (463-535)||(24776563-24776635)
chr5 (463-535)||(26709372-26709444)
chr5 (463-535)||(26979106-26979178)
chr5 (463-535)||(36254105-36254177)
chr5 (463-535)||(24771108-24771180)
[»] chr4 (31 HSPs)
chr4 (301-548)||(8984983-8985230)
chr4 (301-548)||(13700780-13701027)
chr4 (301-548)||(21304531-21304778)
chr4 (301-548)||(54991746-54991993)
chr4 (301-548)||(8979863-8980110)
chr4 (301-548)||(21299411-21299658)
chr4 (19-301)||(8919181-8919467)
chr4 (301-548)||(54990388-54990635)
chr4 (301-535)||(39999405-39999638)
chr4 (301-535)||(40004363-40004596)
chr4 (301-535)||(54343539-54343772)
chr4 (301-535)||(54348693-54348926)
chr4 (332-535)||(36359664-36359867)
chr4 (301-535)||(36354478-36354710)
chr4 (19-298)||(8908906-8909185)
chr4 (332-452)||(53798329-53798449)
chr4 (301-452)||(41393858-41394009)
chr4 (352-452)||(51018753-51018853)
chr4 (301-452)||(9763269-9763420)
chr4 (301-452)||(13695757-13695908)
chr4 (301-452)||(13711370-13711521)
chr4 (372-452)||(4207042-4207122)
chr4 (385-452)||(47045700-47045767)
chr4 (463-535)||(13695431-13695503)
chr4 (463-535)||(9763771-9763843)
chr4 (463-535)||(41393512-41393584)
chr4 (463-535)||(53797898-53797970)
chr4 (453-535)||(51019117-51019199)
chr4 (463-535)||(13710938-13711010)
chr4 (463-535)||(47046060-47046132)
chr4 (152-208)||(8920055-8920111)
[»] chr1 (16 HSPs)
chr1 (301-548)||(27711593-27711840)
chr1 (332-548)||(37404027-37404243)
chr1 (332-548)||(37409146-37409362)
chr1 (332-534)||(34317841-34318043)
chr1 (332-535)||(36684271-36684474)
chr1 (332-548)||(11250732-11250948)
chr1 (332-548)||(27716713-27716929)
chr1 (301-452)||(5725365-5725516)
chr1 (295-452)||(5730771-5730928)
chr1 (301-452)||(3585301-3585452)
chr1 (332-452)||(48245999-48246119)
chr1 (332-390)||(50959011-50959069)
chr1 (463-535)||(5730374-5730446)
chr1 (453-535)||(48246427-48246509)
chr1 (463-535)||(3584870-3584942)
chr1 (414-447)||(50959091-50959124)
[»] scaffold0517 (1 HSPs)
scaffold0517 (332-548)||(3833-4049)
[»] chr7 (29 HSPs)
chr7 (301-535)||(33238338-33238572)
chr7 (301-535)||(33243515-33243749)
chr7 (332-535)||(47994136-47994339)
chr7 (332-535)||(47999311-47999514)
chr7 (301-452)||(21080317-21080468)
chr7 (332-452)||(2233979-2234099)
chr7 (301-452)||(19308872-19309023)
chr7 (301-452)||(42572600-42572751)
chr7 (332-452)||(17496100-17496220)
chr7 (332-452)||(17556994-17557114)
chr7 (301-452)||(12935084-12935235)
chr7 (300-452)||(32211960-32212112)
chr7 (301-452)||(47176492-47176643)
chr7 (301-452)||(43893542-43893693)
chr7 (332-445)||(16538700-16538813)
chr7 (332-445)||(16626849-16626962)
chr7 (463-535)||(2234384-2234456)
chr7 (463-535)||(12934666-12934738)
chr7 (301-384)||(47544745-47544828)
chr7 (463-535)||(19309365-19309437)
chr7 (463-535)||(21080793-21080865)
chr7 (463-535)||(42572214-42572286)
chr7 (463-535)||(43893138-43893210)
chr7 (463-535)||(16539166-16539238)
chr7 (463-535)||(16626424-16626496)
chr7 (463-535)||(17495672-17495744)
chr7 (463-535)||(17557470-17557542)
chr7 (463-535)||(47176904-47176976)
chr7 (475-535)||(32212419-32212479)
[»] chr2 (12 HSPs)
chr2 (301-548)||(40392589-40392836)
chr2 (332-535)||(42723007-42723210)
chr2 (332-535)||(42728176-42728379)
chr2 (300-535)||(44096638-44096872)
chr2 (301-525)||(44754132-44754355)
chr2 (301-525)||(44759298-44759521)
chr2 (332-548)||(40518076-40518297)
chr2 (334-526)||(40519925-40520122)
chr2 (299-452)||(4162889-4163042)
chr2 (332-452)||(28751048-28751168)
chr2 (463-535)||(4163331-4163403)
chr2 (463-535)||(28751483-28751555)
[»] chr3 (23 HSPs)
chr3 (332-548)||(55129060-55129275)
chr3 (299-548)||(17368989-17369238)
chr3 (301-535)||(15762556-15762789)
chr3 (301-535)||(15767717-15767950)
chr3 (301-535)||(20090187-20090421)
chr3 (301-535)||(20095312-20095546)
chr3 (301-452)||(3481645-3481796)
chr3 (332-452)||(34128438-34128558)
chr3 (332-452)||(17358566-17358685)
chr3 (332-452)||(30338127-30338247)
chr3 (301-452)||(30341200-30341351)
chr3 (336-452)||(54271312-54271428)
chr3 (300-452)||(4116945-4117097)
chr3 (370-452)||(3476257-3476339)
chr3 (463-535)||(17358107-17358179)
chr3 (463-535)||(54270914-54270986)
chr3 (463-535)||(3482166-3482238)
chr3 (463-535)||(4117345-4117417)
chr3 (463-535)||(30338506-30338578)
chr3 (463-535)||(34128923-34128995)
chr3 (463-535)||(3476699-3476771)
chr3 (463-535)||(10321712-10321784)
chr3 (488-533)||(10321816-10321861)
[»] scaffold0055 (1 HSPs)
scaffold0055 (332-535)||(3360-3563)
[»] scaffold0052 (1 HSPs)
scaffold0052 (332-535)||(80972-81175)
[»] chr8 (18 HSPs)
chr8 (332-535)||(32010862-32011065)
chr8 (332-535)||(32016036-32016239)
chr8 (301-548)||(2165390-2165638)
chr8 (301-452)||(43998542-43998693)
chr8 (301-452)||(17955130-17955281)
chr8 (332-452)||(24885324-24885444)
chr8 (301-452)||(42513844-42513995)
chr8 (390-452)||(21641211-21641273)
chr8 (453-535)||(24884982-24885064)
chr8 (463-535)||(21643835-21643907)
chr8 (463-535)||(21643020-21643092)
chr8 (463-535)||(21643395-21643467)
chr8 (471-534)||(42514182-42514245)
chr8 (463-535)||(21641520-21641592)
chr8 (463-535)||(21641895-21641967)
chr8 (463-535)||(21642270-21642342)
chr8 (463-535)||(21642645-21642717)
chr8 (463-535)||(43998984-43999056)
[»] scaffold0014 (2 HSPs)
scaffold0014 (332-535)||(31881-32084)
scaffold0014 (332-535)||(26709-26912)
[»] scaffold0594 (2 HSPs)
scaffold0594 (301-452)||(8530-8681)
scaffold0594 (463-535)||(8962-9034)
[»] scaffold0166 (4 HSPs)
scaffold0166 (300-452)||(12981-13133)
scaffold0166 (370-452)||(18508-18590)
scaffold0166 (463-535)||(13493-13565)
scaffold0166 (463-535)||(18946-19018)
[»] scaffold0060 (2 HSPs)
scaffold0060 (453-535)||(37279-37361)
scaffold0060 (394-452)||(37654-37712)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 22702944 - 22703191
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22702944 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 22703043  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22703044 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 22703143  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22703144 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 22703191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 301 - 535
Target Start/End: Original strand, 22697768 - 22698002
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22697768 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 22697867  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22697868 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 22697967  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  22697968 aaactgagaatcgaatactcttctctggttttctc 22698002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 21402258 - 21402011
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21402258 tgttggaacactagtgtataatgaaaaaaacttggagtatagtagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21402159  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |    
T  21402158 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagcttgggaatagtattcatcactcaa 21402059  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  21402058 aaactaagaatcgaatactcttctttggttttctctcctctcttctcc 21402011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 300 - 548
Target Start/End: Original strand, 29490807 - 29491061
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  29490807 gtgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcttttggaatgtaaacacaaggatggagaaactagtgtaaa 29490906  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggc--aata----gtattc-t 492  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |    ||||    || ||  |    
T  29490907 gtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagag-tggtttaaatactcagttttggt 29491005  T
Q  493 tcactccaaaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||    
T  29491006 tcactccaaaactgagaatcaaatactcttctctgattttatctcctctcttctcc 29491061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 2817397 - 2817548
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2817397 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 2817496  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  2817497 tgtgaattgaaaatttaatgtcccacattgggtagatcacacactctagtag 2817548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 34142932 - 34142781
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  34142932 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 34142833  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34142832 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 34142781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 34155548 - 34155397
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  34155548 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 34155449  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34155448 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 34155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 6727773 - 6727924
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  6727773 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 6727872  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  6727873 tgtgaattgaaaattttatgttccacattgggtagatcacacactctagtag 6727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 34376615 - 34376464
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  34376615 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 34376516  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  34376515 tgtgaattgaaaattttatgtcccacattgggtagataacacactctagtag 34376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 24190650 - 24190802
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  24190650 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 24190749  T
Q  401 tgtgaattgaaaa-ttttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  24190750 tgtgaattgaaaatttttatgtcccacattgggtagatcacacactctagtag 24190802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 31983626 - 31983475
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||| ||||||||||    
T  31983626 tgttggaacactagtgtatattggcaaaaacttggagtatactagtttttatgaggagacattggaatgtaaacacaatgatgtagaaattagtgtaaag 31983527  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  31983526 tgtgaattgaaaattttatgtcccgcattgggtagatcacacactctagtag 31983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 31981904 - 31981832
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31981904 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 31981832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 34376270 - 34376198
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34376270 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34376198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 24191126 - 24191198
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  24191126 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 24192223 - 24192295
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  24192223 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 34142418 - 34142358
Alignment:
Q  475 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34142418 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34142358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 34155034 - 34154974
Alignment:
Q  475 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34155034 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34154974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 2817901 - 2817973
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| |||   |||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  2817901 tataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctcttctctggttttctc 2817973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 6728193 - 6728255
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctc 525  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| | ||||||    
T  6728193 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatccccttctc 6728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 17510575 - 17510328
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17510575 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 17510476  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17510475 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 17510376  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17510375 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 17510328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 42020090 - 42019843
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||     
T  42020090 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactaatgtaaaa 42019991  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42019990 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 42019891  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42019890 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 42019843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 42024870 - 42024623
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||     
T  42024870 tgttggaacactagtgtataatgaaaaaaacttgaagtatactagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaaa 42024771  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42024770 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 42024671  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  42024670 aaattgagaatcgaatactcttctctggttttctctcctctcttctcc 42024623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 332 - 548
Target Start/End: Complemental strand, 17505439 - 17505223
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  17505439 ttggaatatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaactattgtaaagtgtgaattgaaaattttatgtcccacatcgg 17505340  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505339 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 17505240  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  17505239 tctctcctctcttctcc 17505223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 332 - 548
Target Start/End: Complemental strand, 43580146 - 43579930
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580146 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 43580047  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||    
T  43580046 gtagatcacatactctagtagaaatcctccttataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctgattt 43579947  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  43579946 tctctcctctcttctcc 43579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 332 - 543
Target Start/End: Complemental strand, 41859070 - 41858861
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  41859070 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaattagtgtaaagtgtgaattgaaaattctatgtcccacatcgg 41858971  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     ||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41858970 gtagatcacac--tctagtagaaattctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 41858873  T
Q  532 tctctcctctct 543  Q
    ||||| ||||||    
T  41858872 tctcttctctct 41858861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 41853955 - 41853846
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41853955 ttggagtatactagggagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattctatgtcccacatcgg 41853856  T
Q  432 atagatcaca 441  Q
     |||||||||    
T  41853855 gtagatcaca 41853846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 1413100 - 1413220
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |     
T  1413100 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattga 1413199  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  1413200 gtagatcacacactctagtag 1413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 36254637 - 36254517
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||    
T  36254637 ttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgttccacattgg 36254538  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  36254537 gtagatcacacactctagtag 36254517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 300 - 452
Target Start/End: Original strand, 24770600 - 24770752
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| |||||||||||||||    
T  24770600 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaa 24770699  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  24770700 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24770752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 26709839 - 26709712
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||| ||||||||||||        ||| |||||||||||  ||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26709839 tgttggaacattagtgtataatggaaaaaatttgaagtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaag 26709740  T
Q  401 tgtgaattgaaaattttatgtcccacat 428  Q
    ||||||||||||||||||||||||||||    
T  26709739 tgtgaattgaaaattttatgtcccacat 26709712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 26979573 - 26979446
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||| ||||||||||||        ||| |||||||||||  ||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26979573 tgttggaacattagtgtataatggaaaaaatttgaagtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaag 26979474  T
Q  401 tgtgaattgaaaattttatgtcccacat 428  Q
    ||||||||||||||||||||||||||||    
T  26979473 tgtgaattgaaaattttatgtcccacat 26979446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 24776124 - 24776206
Alignment:
Q  370 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  24776124 taaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24776206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 1413806 - 1413878
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  1413806 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 1413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 24776563 - 24776635
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||| | | | |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  24776563 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 24776635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 26709444 - 26709372
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | |||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  26709444 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26709372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 26979178 - 26979106
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | |||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  26979178 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 36254177 - 36254105
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| ||||||| || ||| | ||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  36254177 tataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctagttttctc 36254105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 24771108 - 24771180
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||| | | | |||||||| ||||||||||  |||||| || |||||||||||||||||||    
T  24771108 tataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctggttttctc 24771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 8984983 - 8985230
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8984983 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8985082  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8985083 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 8985182  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8985183 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 8985230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 13701027 - 13700780
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  13701027 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 13700928  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13700927 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 13700828  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13700827 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 13700780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 21304531 - 21304778
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21304531 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21304630  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21304631 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 21304730  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21304731 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 21304778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 54991993 - 54991746
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  54991993 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 54991894  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||    
T  54991893 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgaaagctcgggaatagtattcttcacttca 54991794  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54991793 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 54991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 8979863 - 8980110
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8979863 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8979962  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8979963 tgtgaattgaaaattttatgtcccatatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgagaatagtattcttcactcca 8980062  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8980063 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 8980110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 21299411 - 21299658
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  21299411 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaag 21299510  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  21299511 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactcca 21299610  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21299611 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 21299658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 8919467 - 8919181
Alignment:
Q  19 ggattacggtttgaactttggattttttatttatgt--acattaaaaaattgatcactttgagtgatggtagtgtcnnnnnnnnnnnn--aagaagaagc 114  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||              ||||||||||    
T  8919467 ggattagggtttgaactttggattttttatttatgtgtacattaaaaaattgatcactttgagtgatggtagtgtcttttttttttttttaagaagaagc 8919368  T
Q  115 ggtagtannnnnnnctgtttgtgtttgcatgcattctaattcggtgttgcctatttctttttcattttaatttttaaagaaaattaagaagttatagtgt 214  Q
    |||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  8919367 ggtagtatttttttctgttggtgtttgcatgcattctaattcggtgttgcctatttctttttccttttattttttaaagaaaattaagaagttatagtgt 8919268  T
Q  215 acaggcaaaactaaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaagtgt 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8919267 acaggcacaactaaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaagtgt 8919181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 54990388 - 54990635
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    ||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  54990388 tgttggaacactaatgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaag 54990487  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  54990488 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaattctccttataaattgagagctcgggtatagtattcttcactcca 54990587  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  54990588 aaactgagaatcaaatactcttctcttgttttctctcctctctactcc 54990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 39999638 - 39999405
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  39999638 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 39999540  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39999539 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 39999440  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  39999439 aaactgagaatcgaatactcttctctggttttctc 39999405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 40004596 - 40004363
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  40004596 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 40004498  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40004497 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 40004398  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  40004397 aaactgagaatcgaatactcttctctggttttctc 40004363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 54343772 - 54343539
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  54343772 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 54343674  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54343673 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 54343574  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  54343573 aaactgagaatcgaatactcttctctggttttctc 54343539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 54348926 - 54348693
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  54348926 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 54348828  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54348827 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 54348728  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  54348727 aaactgagaatcgaatactcttctctggttttctc 54348693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 36359867 - 36359664
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359867 ttggagtatactagtgagtttgtggagcctttgaaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 36359768  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36359767 gtagatcacacactctagtagaaattctccttataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctggttt 36359668  T
Q  532 tctc 535  Q
    ||||    
T  36359667 tctc 36359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 36354710 - 36354478
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  36354710 tgttggaacactagtgtataatgaaaaac--ttggagtatactagtgaatttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaag 36354613  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||    
T  36354612 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctctttataaattgagagctcagaaatagtattctttactcca 36354513  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  36354512 aaactgagaatcgaatactcttctctggttttctc 36354478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 8909185 - 8908906
Alignment:
Q  19 ggattacggtttgaactttggattttttatttatgtacattaaaaaa-ttgatcactttgagtgatggtagtgtcnnnnnnnnnnnnaagaagaagcggt 117  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||            ||||||| |||||    
T  8909185 ggattagggtttgaaatttggatttcttatttatgtacattaaaaaaattgatcactttgagtgatggtagtgtctttttttt----aagaagaggcggt 8909090  T
Q  118 agtannnnnnnctgtttgtgtttgcatgcattctaattcggtgttgcctatttctttttcatttta----atttttaaagaaaattaagaagttatagtg 213  Q
    ||||        |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||| ||     
T  8909089 agtagtttttt-tgttggtgtttgcatgcattctaattcggtgttgcctgtttctttttcattttactttatttttaaagaaaattaagaagttatcgta 8908991  T
Q  214 tacaggcaaaactaaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaag 298  Q
     | ||| |  |||||||||||| | | ||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  8908990 cataggaaccactaaatcacatataacttttaccattataatgtctacattaaaatgaatataggaaacataagtcttgataaag 8908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 53798449 - 53798329
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  53798449 ttggagtatactagttggtttgtggagcctttggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcctacattgg 53798350  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  53798349 gtagatcacacactctagtag 53798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 41394009 - 41393858
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | |||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  41394009 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtgaagcctttggaatgtaaacacaaggatggaaaaactagtgtaaag 41393910  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  41393909 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 41393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 452
Target Start/End: Original strand, 51018753 - 51018853
Alignment:
Q  352 tgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagta 451  Q
    ||||||| ||||| ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  51018753 tgtggagactttggaatgtacacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagta 51018852  T
Q  452 g 452  Q
    |    
T  51018853 g 51018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 9763269 - 9763420
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  9763269 tgttggaacactagtgtatattggcataaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 9763368  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
      |||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  9763369 catgaattgaaaattttatgtcccacattgagtagatcacacactctagtag 9763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 13695908 - 13695757
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  13695908 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 13695809  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13695808 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 13711521 - 13711370
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  13711521 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 13711422  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13711421 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 4207122 - 4207042
Alignment:
Q  372 aacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4207122 aacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4207042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 47045700 - 47045767
Alignment:
Q  385 agaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47045700 agaaactagtgtaaagtgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 47045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 13695503 - 13695431
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13695503 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 13695431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 9763771 - 9763843
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9763771 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 9763843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 41393584 - 41393512
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  41393584 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 41393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 53797970 - 53797898
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  53797970 tataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 53797898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 535
Target Start/End: Original strand, 51019117 - 51019199
Alignment:
Q  453 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||||  ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  51019117 aaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 51019199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 13711010 - 13710938
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  13711010 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13710938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 47046060 - 47046132
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||  |||||||||||||||||    
T  47046060 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctc 47046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 8920111 - 8920055
Alignment:
Q  152 aattcggtgttgcctatttctttttcattttaatttttaaagaaaattaagaagtta 208  Q
    |||| |||||||||| ||||||||| ||||||  |||| ||| ||||||||||||||    
T  8920111 aattaggtgttgcctgtttcttttttattttatgtttttaagtaaattaagaagtta 8920055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 27711840 - 27711593
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  27711840 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 27711741  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27711740 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 27711641  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27711640 aaactgagaatcgaatactcttctctggttttctctcctctcttctcc 27711593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 37404027 - 37404243
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404027 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 37404126  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404127 gtagatcacacactctagtagaaatcctccttataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 37404226  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  37404227 tctctcctctcttctcc 37404243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 37409146 - 37409362
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409146 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 37409245  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409246 gtagatcacacactctagtataaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 37409345  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  37409346 tctctcctctcttctcc 37409362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 332 - 534
Target Start/End: Original strand, 34317841 - 34318043
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317841 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 34317940  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317941 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 34318040  T
Q  532 tct 534  Q
    |||    
T  34318041 tct 34318043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Original strand, 36684271 - 36684474
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684271 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 36684370  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36684371 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctggttt 36684470  T
Q  532 tctc 535  Q
    ||||    
T  36684471 tctc 36684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 11250732 - 11250948
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11250732 ttggagtataccagtgagtttgtggagtctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 11250831  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  11250832 ttagatcacacactctagtagaaatcctccttataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctggttt 11250931  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  11250932 tctctcctctcttctcc 11250948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 332 - 548
Target Start/End: Complemental strand, 27716929 - 27716713
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27716929 ttggagtatactagtgagtttgtggagcctttggaacgtaagcacaaggatggagaaactagtgtaaagtgtgaattgaaatttttatgtcccacatcgg 27716830  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  27716829 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctggttt 27716730  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  27716729 tctctcctctcttctcc 27716713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 5725516 - 5725365
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5725516 tgttggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 5725417  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  5725416 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 5725365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 295 - 452
Target Start/End: Complemental strand, 5730928 - 5730771
Alignment:
Q  295 aaagtgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagt 394  Q
    |||||||||| ||||||||||||||||||        |||||||||||||||  ||||||| | |||||| ||| |||||||||||||||||||||||||    
T  5730928 aaagtgtgttagaacactagtgtataatggaaaaaatttggagtatactagttggtttgtgaaacctttggaatgtaaacacaaggatggagaaactagt 5730829  T
Q  395 gtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  5730828 gtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 5730771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 3585452 - 3585301
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||     
T  3585452 tgttggaacactagtgtatattggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaaa 3585353  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3585352 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 48245999 - 48246119
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  48245999 ttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattaaaatttttatgtcccacattgg 48246098  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  48246099 gtagatcacacactctagtag 48246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 50959011 - 50959069
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaac 390  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  50959011 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaagaatggagaaac 50959069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 5730446 - 5730374
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  5730446 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 5730374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 453 - 535
Target Start/End: Original strand, 48246427 - 48246509
Alignment:
Q  453 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||||  ||||||| |||| ||||| ||| | |||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  48246427 aaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatcctcttctctggttttctc 48246509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 3584942 - 3584870
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||| | | | | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  3584942 tataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 3584870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 50959091 - 50959124
Alignment:
Q  414 ttttatgtcccacatcggatagatcacacactct 447  Q
    ||||||||||||||||||||||||||| ||||||    
T  50959091 ttttatgtcccacatcggatagatcacgcactct 50959124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 332 - 548
Target Start/End: Complemental strand, 4049 - 3833
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 3950  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3949 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 3850  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  3849 tctctcctctcttctcc 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 33238572 - 33238338
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  33238572 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 33238473  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33238472 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 33238373  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  33238372 aaactgagaatcgaatactcttctctggttttctc 33238338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 301 - 535
Target Start/End: Complemental strand, 33243749 - 33243515
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||    
T  33243749 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacacaaggatggagaaactagtgtaaag 33243650  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33243649 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 33243550  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  33243549 aaactgagaatcgaatactcttctctggttttctc 33243515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 47994339 - 47994136
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994339 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 47994240  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994239 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 47994140  T
Q  532 tctc 535  Q
    ||||    
T  47994139 tctc 47994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 47999514 - 47999311
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47999514 ttggagtatattagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacatcgg 47999415  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47999414 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 47999315  T
Q  532 tctc 535  Q
    ||||    
T  47999314 tctc 47999311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 21080317 - 21080468
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21080317 tgttggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21080416  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  21080417 tgtgaattgaaaattttatgtcccacgttgggtagatcacacactctagtag 21080468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 2233979 - 2234099
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  2233979 ttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 2234078  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  2234079 gtagatcacacactctagtag 2234099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 19308872 - 19309023
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  19308872 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 19308971  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19308972 tgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 19309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 42572751 - 42572600
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  42572751 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 42572652  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42572651 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 42572600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 17496220 - 17496100
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  17496220 ttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17496121  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  17496120 gtagatcacacactctagtag 17496100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 17556994 - 17557114
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  17556994 ttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17557093  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  17557094 gtagatcacacactctagtag 17557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 12935235 - 12935084
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  12935235 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 12935136  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  12935135 tgtgaattgaaaattttatgtcccacattgggtagatcacacactttagtag 12935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 300 - 452
Target Start/End: Original strand, 32211960 - 32212112
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | ||| ||| ||||| ||| ||||||||||||||||||||||||||||||    
T  32211960 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgttgagactttggaatgtaaacacaaggatggagaaactagtgtaaa 32212059  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  32212060 gtgtgaattgaaaattttatgtctcacattgggtagatcacacactctagtag 32212112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 47176492 - 47176643
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  47176492 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 47176591  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  47176592 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 47176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 452
Target Start/End: Complemental strand, 43893693 - 43893542
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||| ||||||    
T  43893693 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagcgtaaag 43893594  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  43893593 tgtgaattgaaaattttatgtccctcattgggtagatcacacactctagtag 43893542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 445
Target Start/End: Original strand, 16538700 - 16538813
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |     
T  16538700 ttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattga 16538799  T
Q  432 atagatcacacact 445  Q
     |||||||||||||    
T  16538800 gtagatcacacact 16538813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 445
Target Start/End: Complemental strand, 16626962 - 16626849
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |     
T  16626962 ttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattga 16626863  T
Q  432 atagatcacacact 445  Q
     |||||||||||||    
T  16626862 gtagatcacacact 16626849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 2234384 - 2234456
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  2234384 tataaatagagagctcgggattagtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 2234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 12934738 - 12934666
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  12934738 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 12934666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 47544745 - 47544828
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatgg 384  Q
    |||||||||||||||||||||||        |||||||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  47544745 tgttggaacactagtgtataatgaaaaaaacttggagtatactagagagtttgtggagcctttggaatgtaaacacaaggatgg 47544828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 19309365 - 19309437
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  19309365 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctggttttctc 19309437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21080793 - 21080865
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  21080793 tataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctggttttctc 21080865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 42572286 - 42572214
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42572286 tataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 42572214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 43893210 - 43893138
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  43893210 tataaatagagagctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctggttttctc 43893138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 16539166 - 16539238
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||  ||| ||||||||||||||||||    
T  16539166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16539238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 16626496 - 16626424
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||  ||| ||||||||||||||||||    
T  16626496 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 17495744 - 17495672
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||| |||||||||| |||||| |||| ||||||||||||||||||    
T  17495744 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17495672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 17557470 - 17557542
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||| |||||||||| |||||| |||| ||||||||||||||||||    
T  17557470 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17557542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 47176904 - 47176976
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| |||   ||||||||||||||||| || |||||||| ||||||||||||||||||    
T  47176904 tataaatagagagctcgggaatgagattcttcactccaaaaccgataatcgaatcctcttctctggttttctc 47176976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 32212419 - 32212479
Alignment:
Q  475 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctgattttctc 32212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 301 - 548
Target Start/End: Complemental strand, 40392836 - 40392589
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  40392836 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttgcaatgtaaacataaggatggagaaactagtgtaaag 40392737  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40392736 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 40392637  T
Q  501 aaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  40392636 aaactgagaatcgaatacttttctctgattttctctcctctcttctcc 40392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Original strand, 42723007 - 42723210
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723007 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42723106  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723107 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 42723206  T
Q  532 tctc 535  Q
    ||||    
T  42723207 tctc 42723210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Original strand, 42728176 - 42728379
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728176 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42728275  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728276 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 42728375  T
Q  532 tctc 535  Q
    ||||    
T  42728376 tctc 42728379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 300 - 535
Target Start/End: Complemental strand, 44096872 - 44096638
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||    
T  44096872 gtgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcatttggaatgtaaacaaaaggatggagaaactagtgtaaa 44096774  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcc 499  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  44096773 gtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactcc 44096674  T
Q  500 aaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||||||||||||||||||||||||||||||||    
T  44096673 aaaactgagaatcgaatactcttctctggttttctc 44096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 301 - 525
Target Start/End: Original strand, 44754132 - 44754355
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  44754132 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 44754230  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44754231 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 44754330  T
Q  501 aaactgagaatcgaatactcttctc 525  Q
    |||||||||||||||||||||||||    
T  44754331 aaactgagaatcgaatactcttctc 44754355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 301 - 525
Target Start/End: Original strand, 44759298 - 44759521
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||| ||||||||||    
T  44759298 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaattagtgtaaag 44759396  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44759397 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 44759496  T
Q  501 aaactgagaatcgaatactcttctc 525  Q
    |||||||||||||||||||||||||    
T  44759497 aaactgagaatcgaatactcttctc 44759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 40518076 - 40518297
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc-g 430  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40518076 ttggagtataatagtgagtttgtggagcctttggaatataaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 40518175  T
Q  431 gatagatcacacactctagtagaaatcctcctt----ataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 526  Q
    | |||||||||||||||||||||||||||||||    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  40518176 ggtagatcacacactctagtagaaatcctccttattaataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctct 40518275  T
Q  527 ggttttctctcctctctgctcc 548  Q
     |||||||||||||||| ||||    
T  40518276 tgttttctctcctctcttctcc 40518297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 334 - 526
Target Start/End: Complemental strand, 40520122 - 40519925
Alignment:
Q  334 ggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc-gga 432  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  40520122 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggg 40520023  T
Q  433 tagatcacacactctagtagaaatcctcctt----ataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 526  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40520022 tagatcacacactctagtagaaatcctccttatgaataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 299 - 452
Target Start/End: Original strand, 4162889 - 4163042
Alignment:
Q  299 tgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaa 398  Q
    |||||||||||||| ||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4162889 tgtgttggaacactggtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaa 4162988  T
Q  399 agtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4162989 agtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 28751048 - 28751168
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28751048 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 28751147  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  28751148 gtagatcacacactctagtag 28751168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 4163331 - 4163403
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4163331 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 4163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 28751483 - 28751555
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| |||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  28751483 tataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 28751555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 332 - 548
Target Start/End: Complemental strand, 55129275 - 55129060
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129275 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaag-atggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 55129177  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129176 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 55129077  T
Q  532 tctctcctctctgctcc 548  Q
    |||||||||||| ||||    
T  55129076 tctctcctctcttctcc 55129060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 299 - 548
Target Start/End: Complemental strand, 17369238 - 17368989
Alignment:
Q  299 tgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaa 398  Q
    ||||||||||||||||| |||||||        || || |||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17369238 tgtgttggaacactagtatataatggaaaaaacttcgattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaa 17369139  T
Q  399 agtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactc 498  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17369138 agtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactc 17369039  T
Q  499 caaaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17369038 caaaactgagaatcgaatactcttctctggttttctctcctctcttctcc 17368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Original strand, 15762556 - 15762789
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  15762556 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 15762654  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15762655 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 15762754  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  15762755 aaactgagaatcgaatactcttctctggttttctc 15762789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Original strand, 15767717 - 15767950
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  15767717 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 15767815  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15767816 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 15767915  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  15767916 aaactgagaatcgaatactcttctctggttttctc 15767950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Original strand, 20090187 - 20090421
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  20090187 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaag 20090286  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20090287 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 20090386  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  20090387 aaactgagaatcgaatactcttctctggttttctc 20090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 301 - 535
Target Start/End: Original strand, 20095312 - 20095546
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  20095312 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaag 20095411  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 500  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20095412 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 20095511  T
Q  501 aaactgagaatcgaatactcttctctggttttctc 535  Q
    |||||||||||||||||||||||||||||||||||    
T  20095512 aaactgagaatcgaatactcttctctggttttctc 20095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 3481645 - 3481796
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3481645 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 3481744  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3481745 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 34128438 - 34128558
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34128438 ttggagtatactagttgatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 34128537  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  34128538 gtagatcacacactctagtag 34128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 17358685 - 17358566
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||| |||||||||  |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  17358685 ttggattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaa-tagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17358587  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  17358586 gtagatcacacactctagtag 17358566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 30338127 - 30338247
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  30338127 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacattgg 30338226  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  30338227 gtagatcacacactctagtag 30338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 30341200 - 30341351
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  30341200 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 30341299  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||| |||||||  | ||||||||||||||||||||    
T  30341300 tgtgaattgaaaattttatggcccacattaggtagatcacacactctagtag 30341351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 54271428 - 54271312
Alignment:
Q  336 agtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatag 435  Q
    |||||||||||   | ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||    
T  54271428 agtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtctaaagtgtgaattgaaaattttatgtcccacattgggtag 54271329  T
Q  436 atcacacactctagtag 452  Q
    |||||||||||||||||    
T  54271328 atcacacactctagtag 54271312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 300 - 452
Target Start/End: Original strand, 4116945 - 4117097
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||  | ||| ||| ||||||||| |||| |||||||||||||||    
T  4116945 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggaaacattggaatgtaaacacaatgatgaagaaactagtgtaaa 4117044  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4117045 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4117097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 3476257 - 3476339
Alignment:
Q  370 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3476257 taaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 17358179 - 17358107
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17358179 tataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 17358107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 54270986 - 54270914
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  54270986 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 54270914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 3482166 - 3482238
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3482166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 3482238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 4117345 - 4117417
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  4117345 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 4117417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 30338506 - 30338578
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  30338506 tataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 30338578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 34128923 - 34128995
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| ||||| |||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34128923 tataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 34128995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 3476699 - 3476771
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||   |||||||||| ||||||||||||||||||    
T  3476699 tataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctggttttctc 3476771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 10321784 - 10321712
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | | | ||||||||||||||||| |||||| |||| |||||||| |||||||||    
T  10321784 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctcaggttttctc 10321712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 10321861 - 10321816
Alignment:
Q  488 attcttcactccaaaactgagaatcgaatactcttctctggttttc 533  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  10321861 attcttcaccccaaaaccgagaatcgaatcctcttctctggttttc 10321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 3563 - 3360
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3563 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatccg 3464  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3463 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 3364  T
Q  532 tctc 535  Q
    ||||    
T  3363 tctc 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Original strand, 80972 - 81175
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  80972 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatccg 81071  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81072 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 81171  T
Q  532 tctc 535  Q
    ||||    
T  81172 tctc 81175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 32011065 - 32010862
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32011065 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 32010966  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010965 gtagatcatacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 32010866  T
Q  532 tctc 535  Q
    ||||    
T  32010865 tctc 32010862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 32016239 - 32016036
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32016239 ttggagtatactagtgaatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 32016140  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016139 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 32016040  T
Q  532 tctc 535  Q
    ||||    
T  32016039 tctc 32016036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 301 - 548
Target Start/End: Original strand, 2165390 - 2165638
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttga-aatttaaacacaaggatggagaaactagtgtaaa 399  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||    
T  2165390 tgttggaacactagtgtataatgaaaaaattttggagtatactagtgagtttgtggagtctttgggaatgtaaacacaaggatggagaaactagtgtaaa 2165489  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcc 499  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2165490 gtgtgaattgaaaattttatgtctcacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcc 2165589  T
Q  500 aaaactgagaatcgaatactcttctctggttttctctcctctctgctcc 548  Q
    |||| |||||||| ||| ||||||||| |||||||||| ||||| ||||    
T  2165590 aaaattgagaatcaaatgctcttctctagttttctctcatctcttctcc 2165638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 43998542 - 43998693
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43998542 tgttggaacactagtgtataatgaaaaaaacttggagtatactagttggtttgtggagcctttgaaatgtaaacacaaggatggagaaactagtgtaaag 43998641  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  43998642 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 43998693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 17955130 - 17955281
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||||||        || ||||||||||||   ||||||||||||||| ||| ||||||||||||||||||||||||||| |||    
T  17955130 tgttggaacactagtgtataatggaaaagacttagagtatactagttgttttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtgaag 17955229  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  17955230 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 17955281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 24885444 - 24885324
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  24885444 ttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 24885345  T
Q  432 atagatcacacactctagtag 452  Q
     ||||||||||||||||||||    
T  24885344 gtagatcacacactctagtag 24885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 42513844 - 42513995
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| | ||| ||| |||||||||||||| ||||| ||||||||||    
T  42513844 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaaatagtgtaaag 42513943  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42513944 tgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 42513995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 21641211 - 21641273
Alignment:
Q  390 ctagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  21641211 ctagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 21641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 453 - 535
Target Start/End: Complemental strand, 24885064 - 24884982
Alignment:
Q  453 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||||  ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  24885064 aaatcctctctataaatagagagctcgggaatggaattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 24884982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21643835 - 21643907
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  21643835 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 21643907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21643020 - 21643092
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  21643020 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21643395 - 21643467
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  21643395 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 534
Target Start/End: Original strand, 42514182 - 42514245
Alignment:
Q  471 gagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttct 534  Q
    |||||||||| |||   ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  42514182 gagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttct 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21641520 - 21641592
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  21641520 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21641895 - 21641967
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  21641895 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21642270 - 21642342
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  21642270 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 21642645 - 21642717
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  21642645 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 43998984 - 43999056
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| | |   |||||| |||| ||||||||||||||||| |||||||||| |||||||    
T  43998984 tataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctgattttctc 43999056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 32084 - 31881
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32084 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 31985  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  31984 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttt 31885  T
Q  532 tctc 535  Q
    ||||    
T  31884 tctc 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 26912 - 26709
Alignment:
Q  332 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 431  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26912 ttggagtatactagtgagtttgtggagcctttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 26813  T
Q  432 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 531  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  26812 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttt 26713  T
Q  532 tctc 535  Q
    ||||    
T  26712 tctc 26709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 8530 - 8681
Alignment:
Q  301 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 400  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8530 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8629  T
Q  401 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  8630 tgtgaatttaaaattttatgtcccacattgggtagatcacacactctagtag 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 8962 - 9034
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | ||||||||||||||||  ||||||||||| ||||||||| ||||||||    
T  8962 tataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctctagttttctc 9034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 300 - 452
Target Start/End: Original strand, 12981 - 13133
Alignment:
Q  300 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 399  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| |||||||||||||||    
T  12981 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaa 13080  T
Q  400 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13081 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 18508 - 18590
Alignment:
Q  370 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  18508 taaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 13493 - 13565
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  13493 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 18946 - 19018
Alignment:
Q  463 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||| |||||||| | | | |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18946 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 19018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 535
Target Start/End: Complemental strand, 37361 - 37279
Alignment:
Q  453 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctc 535  Q
    ||||||||  ||||||| |||||||||| |||   ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37361 aaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 37279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 37712 - 37654
Alignment:
Q  394 tgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 452  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  37712 tgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactccagtag 37654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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