View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_31 (Length: 229)
Name: NF12049_low_31
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 7174195 - 7174407
Alignment:
| Q |
1 |
tagatagtatccttcactctgattatctgtaaatcccaacatctctaacatcattgaaagtatggacaagtaaacaaatcaagaaaatcacaacagatac |
100 |
Q |
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| T |
7174195 |
tagatagtatcttccactctgattatctgtaaatcccaaaatctctaacatcattgaaagtatggacaagtaaacaaatcaagaaaatcacaacagatac |
7174294 |
T |
|
| Q |
101 |
taataggaagaaaataattagtgagactatattcaagaaagcaaaaaccaaactagnnnnnnntcatgtttaacaagttgatcgtaattttaccttaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7174295 |
taataggaagaaaataattagtgagactatattcaagaaagcaaaaaccaaactagaaaaaaatcatgtttaacaagttgaacgtaattttaccttaatc |
7174394 |
T |
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| Q |
201 |
gacgtatgagttc |
213 |
Q |
| |
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||||||||||||| |
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| T |
7174395 |
gacgtatgagttc |
7174407 |
T |
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