View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_35 (Length: 202)
Name: NF12049_low_35
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 7e-51; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 35913633 - 35913496
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
35913633 |
caaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatcattcctatatgga |
35913534 |
T |
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| Q |
115 |
agcctgcttcctgcttcaccaataagttaatgggttct |
152 |
Q |
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| T |
35913533 |
atcctgcctcctgcttcaccatcaaattaaagggttct |
35913496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 35926605 - 35926499
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35926605 |
caaaggattaacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacccgaacgtgctttgactttgatctcatcattcctctatgga |
35926506 |
T |
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| Q |
115 |
agcctgc |
121 |
Q |
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||||||| |
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| T |
35926505 |
agcctgc |
35926499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 35920026 - 35919907
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35920026 |
caaaggattgacatttgttacagtgagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatcattcctctatgga |
35919927 |
T |
|
| Q |
115 |
agcctgcttcctgcttcacc |
134 |
Q |
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| ||||| | ||| |||||| |
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| T |
35919926 |
atcctgccttctggttcacc |
35919907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 35939085 - 35938979
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
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||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35939085 |
caaaggattaacatttgttacagtgagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatcattcctctatgga |
35938986 |
T |
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| Q |
115 |
agcctgc |
121 |
Q |
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| ||||| |
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| T |
35938985 |
atcctgc |
35938979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 35933426 - 35933287
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |||| |||||||||||||||||| |
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| T |
35933426 |
caaaggattgacatttgtgacagtaagaggagcaggacatcttgttccaagctggcagccagaaagggcattgacaatgatatcatcattcctctatgga |
35933327 |
T |
|
| Q |
115 |
agcctgcttcctgcttcaccaataagttaatgggttctaa |
154 |
Q |
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|| ||||||||| |||||||| || ||||||||||||| |
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| T |
35933326 |
agtctgcttcctacttcaccatcaaaataatgggttctaa |
35933287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 35909236 - 35909096
Alignment:
| Q |
15 |
caaaggattgacatttgtaacagtaagaggagcaggacatcttgttccaagctggcaaccagaacgtgctttgactttgatctcatcattcctctatgga |
114 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |||| |||||||||||||||||| |
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| T |
35909236 |
caaaggattgacatttgtgacagtaagaggagcaggacatcttgttccaagctggcagccagaaagggcattgacaatgatatcatcattcctctatgga |
35909137 |
T |
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| Q |
115 |
agcctgcttcctgcttcaccaataagttaatgggttctaag |
155 |
Q |
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|| ||||||||| ||||||| || ||||| ||||||||| |
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| T |
35909136 |
agtctgcttcctagttcaccatcaaattaattggttctaag |
35909096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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