View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_4 (Length: 558)
Name: NF12049_low_4
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 43166328 - 43166010
Alignment:
| Q |
12 |
gatggacatcagactgaactgaaaatgtcatttctgcatttataaggttactgaaaatgtcatttatcaagtagttatatgacgtgtacnnnnnnngcat |
111 |
Q |
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| T |
43166328 |
gatggacaacagactgaactgaaaatgtcatttctgcatttataaggttactgaaaatgtcatttatcaagtagttatatgatgtgtactttttttgcat |
43166229 |
T |
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| Q |
112 |
taaacattgttttattagaaaa-tacatatattaaatcccttctaatcataaactcaatggatatttttgatagacaataatgtgttgtttaatgaaatt |
210 |
Q |
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| T |
43166228 |
taaactttgttttattagaaaaatacatatattaaatcccttctaatcataaactcaatgtatatttttgatagacaataatgtgttgtttaatgtaatt |
43166129 |
T |
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| Q |
211 |
attacaatgagttcaagcactatcgatcgtgtgcaccagttataacactaatattggactcaggtcacactcacaaggtcccgatatagctgtttagaat |
310 |
Q |
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| T |
43166128 |
attacaatgagttcaagcactatcgatcgtgtgcaccagttataacactaatattggactcaggtcacactcacaaggtcccgatatagctgtttataat |
43166029 |
T |
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| Q |
311 |
aaacattaaaatttaacaa |
329 |
Q |
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| T |
43166028 |
aaacattaaaatttaacaa |
43166010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 353 - 540
Target Start/End: Complemental strand, 43166020 - 43165837
Alignment:
| Q |
353 |
aaatttaacaaatcttataactgactttatagaccattatttgttagttaattattattattagtcagtgtgtgggtatcgtatcaaaattttctctcag |
452 |
Q |
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| T |
43166020 |
aaatttaacaaatcttataactgactttatagaccattatttgttagttaattattatta---gttagtgtgtgggtatcgtatcaaaattttctttcag |
43165924 |
T |
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| Q |
453 |
aatcattactaacgtggcgtatgtaatgtcgacaacgatcttgacattgtccaatgagtaattggtggaccatgctttgctagtgatt |
540 |
Q |
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| T |
43165923 |
aatcat-actaacgtggcgtatgtaatgtcgacaacgatcttgacattgtccaatgagtaattggtggaccatgctttgctcgtgatt |
43165837 |
T |
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