View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12049_low_5 (Length: 551)

Name: NF12049_low_5
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12049_low_5
NF12049_low_5
[»] chr3 (5 HSPs)
chr3 (386-539)||(5354697-5354855)
chr3 (376-428)||(45182959-45183011)
chr3 (378-428)||(6890978-6891028)
chr3 (378-428)||(6931031-6931081)
chr3 (379-427)||(33040934-33040982)
[»] scaffold0012 (1 HSPs)
scaffold0012 (398-538)||(194028-194171)
[»] chr5 (5 HSPs)
chr5 (378-477)||(26543853-26543952)
chr5 (378-476)||(31501805-31501903)
chr5 (378-428)||(31680347-31680397)
chr5 (377-428)||(17332688-17332739)
chr5 (397-473)||(39434695-39434771)
[»] chr2 (6 HSPs)
chr2 (378-477)||(34523220-34523319)
chr2 (415-476)||(22466265-22466326)
chr2 (377-428)||(8147330-8147381)
chr2 (378-428)||(45418563-45418613)
chr2 (378-428)||(26237937-26237987)
chr2 (379-428)||(44084740-44084789)
[»] scaffold0769 (1 HSPs)
scaffold0769 (380-477)||(1259-1356)
[»] chr4 (8 HSPs)
chr4 (28-95)||(40316206-40316273)
chr4 (28-95)||(40326280-40326347)
chr4 (377-428)||(6690372-6690423)
chr4 (378-428)||(49908789-49908839)
chr4 (376-428)||(5517501-5517553)
chr4 (397-436)||(36382474-36382513)
chr4 (228-295)||(44728450-44728517)
chr4 (398-455)||(30216852-30216909)
[»] scaffold0168 (1 HSPs)
scaffold0168 (415-477)||(12703-12765)
[»] chr1 (1 HSPs)
chr1 (423-477)||(21976994-21977048)
[»] chr8 (4 HSPs)
chr8 (20-100)||(2154699-2154779)
chr8 (377-428)||(23402087-23402138)
chr8 (377-428)||(36408530-36408581)
chr8 (379-428)||(2729333-2729382)
[»] chr6 (8 HSPs)
chr6 (231-292)||(21205624-21205685)
chr6 (235-319)||(21354489-21354575)
chr6 (385-476)||(24697906-24697997)
chr6 (378-457)||(28996710-28996789)
chr6 (378-428)||(13646997-13647047)
chr6 (398-476)||(18339106-18339184)
chr6 (378-428)||(34385525-34385575)
chr6 (228-264)||(21305712-21305748)
[»] chr7 (4 HSPs)
chr7 (376-428)||(7002703-7002755)
chr7 (376-428)||(7048574-7048626)
chr7 (387-455)||(34389166-34389234)
chr7 (386-428)||(8867868-8867910)
[»] scaffold1787 (1 HSPs)
scaffold1787 (228-295)||(1282-1349)
[»] scaffold0502 (1 HSPs)
scaffold0502 (398-476)||(5230-5308)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 386 - 539
Target Start/End: Original strand, 5354697 - 5354855
Alignment:
Q  386 gtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc-----nnn 480  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||            
T  5354697 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatccttaattttctcacattaggtccaacctataggcccatttacacacttcaaaaaaaa 5354796  T
Q  481 nnnnnnngggcaaatacatcacacgcgtgacaaattcacaacacaaactctcgtctctg 539  Q
           ||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  5354797 aaaaattgggcaaatacatcacacgcatcacaaattcacaacacaaactctcttctctg 5354855  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 45182959 - 45183011
Alignment:
Q  376 atcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||| ||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  45182959 atcaagggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 45183011  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 6890978 - 6891028
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| |||||| ||||||||| ||||||||||||||    
T  6890978 caggggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatc 6891028  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 6931081 - 6931031
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| ||||||||||| |||| ||||||||||||||    
T  6931081 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 6931031  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 33040934 - 33040982
Alignment:
Q  379 aggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgat 427  Q
    ||||| |||||||| ||| |||||||||||||||| || ||||||||||    
T  33040934 aggggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgat 33040982  T

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Target: scaffold0012 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 398 - 538
Target Start/End: Original strand, 194028 - 194171
Alignment:
Q  398 ggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttcnnnnnnnnnn---gggcaaa 494  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  194028 ggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacctataggcccatttacacacttcaaaaaaaaaaaaggggcaaa 194127  T
Q  495 tacatcacacgcgtgacaaattcacaacacaaactctcgtctct 538  Q
    |||||||||| | | ||||||||||||||||||| ||| |||||    
T  194128 tacatcacacacatcacaaattcacaacacaaaccctcttctct 194171  T

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Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 477
Target Start/End: Complemental strand, 26543952 - 26543853
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc 477  Q
    |||||| ||||| || ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26543952 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 26543853  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 476
Target Start/End: Complemental strand, 31501903 - 31501805
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacactt 476  Q
    |||||| |||||||| ||| |||||||||||||| | ||||||||||||||  ||||||   |||||||| ||||||| | | ||| ||| ||||||||    
T  31501903 caggggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacactt 31501805  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 31680347 - 31680397
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  31680347 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 31680397  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 17332739 - 17332688
Alignment:
Q  377 tcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| |||||||| ||| |||||||||||||| | ||||||||||||||    
T  17332739 tcaggggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatc 17332688  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 39434695 - 39434771
Alignment:
Q  397 tggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacaca 473  Q
    ||||||||| ||||||| ||||||||||||||  ||||||  ||||||||| | ||||| | | ||||||| |||||    
T  39434695 tggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacaca 39434771  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 477
Target Start/End: Original strand, 34523220 - 34523319
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc 477  Q
    |||||| ||||| || ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  34523220 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 34523319  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 22466265 - 22466326
Alignment:
Q  415 gcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacactt 476  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22466265 gcccgggctcgatccgtaatttcctcacattaggcccaacctatagacccatttacacactt 22466326  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 8147330 - 8147381
Alignment:
Q  377 tcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  8147330 tcaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 8147381  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 45418563 - 45418613
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  45418563 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 45418613  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 26237937 - 26237987
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| ||||| || ||| |||||||||||||||| ||||||||||||||    
T  26237937 caggggtggttttacagcccggcgaccccgggcggtcgcccgggctcgatc 26237987  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 44084789 - 44084740
Alignment:
Q  379 aggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||| |||||||| ||| ||||||||||||| || ||||||||||||||    
T  44084789 aggggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatc 44084740  T

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Target: scaffold0769 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 1259 - 1356
Alignment:
Q  380 ggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc 477  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1259 ggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 1356  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 40316273 - 40316206
Alignment:
Q  28 gagcatcagacttccggtgagcaacatacgtcgaaactgagcatggaaaatcaccctgcaatgatgga 95  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  40316273 gagcatcagacttccggtgagcgtcatacgtcgaaactgagcatggaaaatcactctgcaatgatgga 40316206  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 40326347 - 40326280
Alignment:
Q  28 gagcatcagacttccggtgagcaacatacgtcgaaactgagcatggaaaatcaccctgcaatgatgga 95  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  40326347 gagcatcagacttccggtgagcgtcatacgtcgaaactgagcatggaaaatcactctgcaatgatgga 40326280  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 6690423 - 6690372
Alignment:
Q  377 tcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  6690423 tcaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 6690372  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 49908839 - 49908789
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  49908839 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 49908789  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 5517553 - 5517501
Alignment:
Q  376 atcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||||| |||||||| ||| |||||||||||||||| ||| ||||||||||    
T  5517553 atcaggggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatc 5517501  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Complemental strand, 36382513 - 36382474
Alignment:
Q  397 tggcgaccccgggcggtagcccgggctcgatccctaattt 436  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  36382513 tggcgaccccgggcggtcgcccgggctcgatccataattt 36382474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 44728517 - 44728450
Alignment:
Q  228 ccatttctgatgcacacctttgacattaagattcaccatttgattgttgcatttgtgaacaaagtgtg 295  Q
    ||||||||||||||||| || |||||||||||||  | |||  | | |||||||||||||||||||||    
T  44728517 ccatttctgatgcacactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtg 44728450  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 30216909 - 30216852
Alignment:
Q  398 ggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacc 455  Q
    |||||||||||||||| ||||||||||||||  ||||||   |||||||| |||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacc 30216852  T

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Target: scaffold0168 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 12703 - 12765
Alignment:
Q  415 gcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc 477  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  12703 gcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 12765  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 21977048 - 21976994
Alignment:
Q  423 tcgatccctaatttcctcacattaggcccaacctataggcccatttacacacttc 477  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21977048 tcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 21976994  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2154699 - 2154779
Alignment:
Q  20 cttccggcgagcatcagacttccggtgagcaacatacgtcgaaactgagcatggaaaatcaccctgcaatgatggaagatt 100  Q
    |||| |||||| ||| || ||| |||||| ||| |||| |||||| ||||||||||||||| |||||||||||||||||||    
T  2154699 cttcaggcgagtatcggatttcaggtgagaaacgtacggcgaaaccgagcatggaaaatcagcctgcaatgatggaagatt 2154779  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 23402087 - 23402138
Alignment:
Q  377 tcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  23402087 tcaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 23402138  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 36408530 - 36408581
Alignment:
Q  377 tcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||    
T  36408530 tcaggggtggtttcaccgcccggcgacctcgggcggtcgcccgggctcgatc 36408581  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 2729382 - 2729333
Alignment:
Q  379 aggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||| |||||||| ||| |||||||||||||||  ||||||||||||||    
T  2729382 aggggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatc 2729333  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 21205685 - 21205624
Alignment:
Q  231 tttctgatgcacacctttgacattaagattcaccatttgattgttgcatttgtgaacaaagt 292  Q
    |||| |||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||||||    
T  21205685 tttccgatgcatacctttgacattaaggttcaccatttcattgctgcatttatgaacaaagt 21205624  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 21354575 - 21354489
Alignment:
Q  235 tgatgcacacctttgacattaagattcaccatttgattgttgcatttgtgaacaaag--tgtgtggaaaatttttggtggaattaaa 319  Q
    ||||||||| ||| ||||||||| |||||| ||  |||| |||||| ||||||||||  ||||||||||| || |||||||||||||    
T  21354575 tgatgcacagcttggacattaaggttcacccttctattgctgcattagtgaacaaagtttgtgtggaaaaattctggtggaattaaa 21354489  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 476
Target Start/End: Complemental strand, 24697997 - 24697906
Alignment:
Q  385 ggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacactt 476  Q
    |||||||| ||| ||||||||||| |  | |||||||||| |||  ||||||  ||||||||||||||||| | | ||||||| ||||||||    
T  24697997 ggtttcaccgcccggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacactt 24697906  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 28996710 - 28996789
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaaccta 457  Q
    |||||| |||||||| ||| |||||||||||||||| ||||| ||||||||  ||||||   | |||||| |||||||||    
T  28996710 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaaccta 28996789  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 13646997 - 13647047
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| ||||||||  || |||||||||||||||| ||||||||||||||    
T  13646997 caggggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatc 13647047  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 18339106 - 18339184
Alignment:
Q  398 ggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacactt 476  Q
    |||||||||||||||| ||||||||||||||  ||||||   |||||||| ||||| ||| | ||| ||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacactt 18339184  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 34385575 - 34385525
Alignment:
Q  378 caggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||| |||||||| ||| |||||||||||||||| |||| |||||||||    
T  34385575 caggggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatc 34385525  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 21305748 - 21305712
Alignment:
Q  228 ccatttctgatgcacacctttgacattaagattcacc 264  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  21305748 ccatttctgatgcacaccttagacattaaggttcacc 21305712  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 7002703 - 7002755
Alignment:
Q  376 atcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||    
T  7002703 atcaggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatc 7002755  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 7048574 - 7048626
Alignment:
Q  376 atcaggggaggtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    |||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||    
T  7048574 atcaggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatc 7048626  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 34389234 - 34389166
Alignment:
Q  387 tttcactgcctggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacc 455  Q
    |||||| ||| |||||||||||||||| ||||||||||||||  ||||||   |||||||| |||||||    
T  34389234 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacc 34389166  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 8867910 - 8867868
Alignment:
Q  386 gtttcactgcctggcgaccccgggcggtagcccgggctcgatc 428  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||    
T  8867910 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 8867868  T

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Target: scaffold1787 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 1282 - 1349
Alignment:
Q  228 ccatttctgatgcacacctttgacattaagattcaccatttgattgttgcatttgtgaacaaagtgtg 295  Q
    |||||||||||||||| ||| ||||||||| |||||| ||| ||||  |||||||||| || ||||||    
T  1282 ccatttctgatgcacagcttggacattaaggttcacccttttattgccgcatttgtgatcagagtgtg 1349  T

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Target: scaffold0502 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 5230 - 5308
Alignment:
Q  398 ggcgaccccgggcggtagcccgggctcgatccctaatttcctcacattaggcccaacctataggcccatttacacactt 476  Q
    |||||||||||||||| ||||||||||||||  ||||||   |||||||| ||||| ||| | ||| ||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacactt 5308  T

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