View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_6 (Length: 542)
Name: NF12049_low_6
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 121 - 533
Target Start/End: Complemental strand, 46504490 - 46504082
Alignment:
| Q |
121 |
atttaaaaaactattgtgtcccttaaatatataataattttaaattactagaattgtttatttattttcaaataggaccataattgatactagtggtatt |
220 |
Q |
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| T |
46504490 |
atttgaaaaactattgtgtcccttaaatatataataattttaaattactagaattgtttatttcttttcaaataggaccatagttgatactagtggtatt |
46504391 |
T |
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| Q |
221 |
gggggatattaaaaatcaaagttaaacagatcatatacatatataagactattttataagaaacatataataaggattaagttgtaattatcatgtgatg |
320 |
Q |
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| T |
46504390 |
gggggatattaaaaatcaaagttaaacagatcatatacata----agactattttataagaaacatataataaggattaagttgtaattatcatgtgatg |
46504295 |
T |
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| Q |
321 |
attgtgatctttagtaccttgagatccaccaagcatttgaagagcattaacaaatctacggtgcaagtctggtgaccaacaccttcttgctttcctatga |
420 |
Q |
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| T |
46504294 |
attgtgatctttagtaccttgagatccaccaagcatttgaagagcattaacaaatctacggtgcaagtctggtgaccaacaccttcttgctttcctatga |
46504195 |
T |
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| Q |
421 |
gtttggtttgaattattgcttgttgtctgagtttgtgatgatgctactggacttccttttccttgattatcagcttcattccctgaatttgttttccctt |
520 |
Q |
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| T |
46504194 |
gtttggtttgaattattgcttgttgtctgagtttgtgatgatgctactggacttccttttccttgattatcaacttcattccctgaatttgttttccctt |
46504095 |
T |
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| Q |
521 |
tctctgctcctcc |
533 |
Q |
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| T |
46504094 |
tttctgcttctcc |
46504082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 46504715 - 46504596
Alignment:
| Q |
15 |
accttcatcaactcccttatctgttttggtgttgccactacaataaaacaaacatataaatataaaaaagaa-----gttaatgatgaattaattgatga |
109 |
Q |
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| T |
46504715 |
accttcatcaactcccttatctgttttggtgttgccactacaataaaacaaacatataaatataaaaaaaaaaaaaagttaatgatgaattaattgatga |
46504616 |
T |
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| Q |
110 |
gcatgatatatatttaaaaa |
129 |
Q |
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| T |
46504615 |
gcatgatatatatttaaaaa |
46504596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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