View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_8 (Length: 523)
Name: NF12049_low_8
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 266 - 513
Target Start/End: Complemental strand, 41966215 - 41965968
Alignment:
| Q |
266 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcatctccactttctccaactcatcatccttcattaccacctca |
365 |
Q |
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| T |
41966215 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcatttccactttctccaactcatcatccttcattaccacctca |
41966116 |
T |
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| Q |
366 |
tcttcaaccaaatcaatctcatcatcacttttctcttggaacattagtcaatgacagcatgttgcaaaaccctttccaaaatcatggtaatttaatcaac |
465 |
Q |
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| T |
41966115 |
tcttcaaccaaatcaatctcatcatcacttttctcttggaacattagtcaatgacaacatgttgcaaaaccctttccaaaatcatggtaatttaatcaac |
41966016 |
T |
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| Q |
466 |
ctcttttatatctgcttcaagctgccacatatataaatataacctatg |
513 |
Q |
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| T |
41966015 |
ctcttttatatctgcttcaagctgccacatatataaatataacctatg |
41965968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 41966393 - 41966211
Alignment:
| Q |
53 |
caacctctattctccctaattcccctttatcttcatctacttaaagaggtttggagagagatagcaagagctttaaaccctagctagtatccttggtaaa |
152 |
Q |
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| T |
41966393 |
caacctctattctccctaattcccctttatcttcatctacttaaagaggtttggagagagatagcaagagctttaaaccctagctagtatccttggtaaa |
41966294 |
T |
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| Q |
153 |
cctataactatatcactctttcactactttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
235 |
Q |
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| T |
41966293 |
cctataactatatcactctttcactactttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
41966211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 24563999 - 24563937
Alignment:
| Q |
386 |
atcatcacttttctcttggaacattagtcaatgacagcatgttgcaaaaccctttccaaaatcatggta |
454 |
Q |
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| T |
24563999 |
atcatcactttcctcttgga---ttagtcaatgacaacatgg---aaaaccctttccaaaatcatggta |
24563937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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