View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_low_9 (Length: 516)
Name: NF12049_low_9
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 6201311 - 6200810
Alignment:
| Q |
1 |
acacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctcttccctcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6201311 |
acacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcatcattagaacccagctccacgatccactgtccattcctctcttccctcct |
6201212 |
T |
|
| Q |
101 |
taacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttattttcttttgtttatgtcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6201211 |
taacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttatttacttttgtttatgtcaatat |
6201112 |
T |
|
| Q |
201 |
atttgaatctattaataaatc-taacaagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctc |
299 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6201111 |
atttgaatctattaataaaacctaacaagtttttattattttaattttgtatgtagatgataaagagagcagtgaaggaattgaatgagaaaagtggctc |
6201012 |
T |
|
| Q |
300 |
aaccgaggaagatatctccaagttcattagaagggaatatgataatgatttgccatttgatcatgcatctattcttcatagtcgtcttaagaagttttgc |
399 |
Q |
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| T |
6201011 |
aaccgaggaagatatctccaagttcatcagaagggaatatgataatgatttgccatttgatcacgcgtttattcttcatagtcgtcttaagaagttttgc |
6200912 |
T |
|
| Q |
400 |
atgagtggagaacttttgtgtactgagaatggcaaatatgtgtttgttgattgtgaaagtgaagtggaag---aagacgacgacgatgaagaagatgaag |
496 |
Q |
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| T |
6200911 |
atgagtggagaacttttgtgtaccgagaatggcaaatatgtgtttgttgattgtgaaagtgaagtggaagaagaagaagacgacgatgaagaagatgaag |
6200812 |
T |
|
| Q |
497 |
ag |
498 |
Q |
| |
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|| |
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| T |
6200811 |
ag |
6200810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 43367607 - 43367129
Alignment:
| Q |
1 |
acacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctcttccctcct |
100 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| | |
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| T |
43367607 |
acaccatgctgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacacgatccactgtccactcctctcctccctcgt |
43367508 |
T |
|
| Q |
101 |
taacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaa-taactctttctttattttcttttgtttatgtcaata |
199 |
Q |
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|||| | ||||||| |||| ||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43367507 |
taaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcggttagaaactaactctttctttattttcttttgtttatgtcaatt |
43367408 |
T |
|
| Q |
200 |
tatttgaatctattaataaatc------taacaagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaag |
293 |
Q |
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|||||||| ||| |||||| | | |||||||||| | |||| || || |||||||||||||| ||| ||||||| ||| |||||||||| |
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| T |
43367407 |
gatttgaatttataaataaaacctctcatcacaagttttt-tattttttgttaattacgtagatgataaagagagcgatgaaggagttggatgagaaaag |
43367309 |
T |
|
| Q |
294 |
tggctcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttgccatttgatcatgcatctattcttcatagtcgtcttaagaag |
393 |
Q |
| |
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||||| || ||||||| |||||| |||| ||||||||| |||||||||| ||||| || ||||||||||||||||||||||||| || |||| ||||| |
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| T |
43367308 |
tggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagatttaccgtttgatcatgcatctattcttcatattcatcttcagaag |
43367209 |
T |
|
| Q |
394 |
ttttgcatgagtggagaacttttgtgtactgagaatggcaaatatgtgtttgttgattgtgaaagtgaagtggaagaaga |
473 |
Q |
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||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43367208 |
ctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgattgtgaaagtgaagtggaagaaga |
43367129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 341
Target Start/End: Complemental strand, 18840798 - 18840702
Alignment:
| Q |
245 |
tttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatga |
341 |
Q |
| |
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||||| ||||||||||||| |||||| | ||||| |||||||| || ||||||| || |||| || ||||| | |||||||||||||||||||| |
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| T |
18840798 |
tttgtgtgtagatgataaacaaagcaatcaaggagttgaatgacgaatgtggctcgactgaggcagcaatctctgaattcattagaagggaatatga |
18840702 |
T |
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