View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_1 (Length: 783)
Name: NF1204_high_1
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 571; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Original strand, 11725906 - 11726565
Alignment:
| Q |
1 |
tcatgatgtgtaggattatatatgtttgaaagtagtccttcatatgacacacatgtttggtagaattgttgatttaatagtttgttgtaaaagaacgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11725906 |
tcatgatgtgtaggattatatatgtttgaaagtagttcttcatatgacacacatgtttggtagaattgttgatttaatagtttgttgtaaaagaacgttg |
11726005 |
T |
|
| Q |
101 |
tcaatggacccaaatgtttacatgcacttaaagcttgagtatcaaatttttaaactcttcatttctaccatcatctttgtcactatcttaaacacttgta |
200 |
Q |
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| T |
11726006 |
tcaatggacccaaatgtttccatgcacttaaagcttgagtatcaaatttttaaactcttcatttctaccatcatctttgtcactatcttaaacacttgta |
11726105 |
T |
|
| Q |
201 |
tgaaaaccctacaatgtttgctgtaatgagattcctgcgaaggttgacaccatgactacaaaaattgaacagatgaaacaaaaaatgaccaatgctgaaa |
300 |
Q |
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| T |
11726106 |
tggaaaccctacaatgtttgctgtaatgagattcctgcgaaggttgacaccataactacaaaaattgaacagatgaaacaaaaaatgaccaatgctgaaa |
11726205 |
T |
|
| Q |
301 |
tgtttaacgtggattaccatgttttgattgggtttccacatgggtgtgttcgatcagaattggagacgacgtactatttgcttgatttgaggcataaagt |
400 |
Q |
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| T |
11726206 |
tgtttaacgtggattaccatgttttgattgggtttccacatgggtgtgttcgatcagaattggagaggacgtactatttgcttgatttgaggcataaatt |
11726305 |
T |
|
| Q |
401 |
atacacatcgacaagtttcagcaagaggtttaaacttgatgatgatgatcaggatgtctagtcaattaaggatatagtgaagatgtatgttaatttgtcg |
500 |
Q |
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| T |
11726306 |
atagacatcgacaagtttcagcaaacggtttaaacttgatgatgatgatcgggatctctagtcaattaaggatatagtgaagatgtatgttaatttgtcg |
11726405 |
T |
|
| Q |
501 |
tataaagtgcttaaaaaatgagtattcaagtgttatgagtacaagtattgaaattgttttttagagaaatggaagaaattgttttgtatttacaacaaac |
600 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
11726406 |
tgtaaagtgcttaaaaaatgagtattcgagtgttatgagtacaagtattgaagaag--aagtagagaaatggaagaaattgttttgtatttacaacaaac |
11726503 |
T |
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| Q |
601 |
tttttgagatgtaattgtacataatgtattcataacacatgaataccctttctcaagcaaaa |
662 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11726504 |
ttttcgagatgtaattgtacataatgtattcataacacatgaataccctttctcaagcaaaa |
11726565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 685 - 754
Target Start/End: Original strand, 11726559 - 11726628
Alignment:
| Q |
685 |
agcaaaagtttgttgtaactacaaaaccatttcattcatttctcggcgtcttcttccataatgtattcat |
754 |
Q |
| |
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| T |
11726559 |
agcaaaagtttgttgtaactacaaaaccgtttcattcatttctcggcgtcttcttccataatgtattcat |
11726628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 620 - 660
Target Start/End: Original strand, 11726615 - 11726655
Alignment:
| Q |
620 |
cataatgtattcataacacatgaataccctttctcaagcaa |
660 |
Q |
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| T |
11726615 |
cataatgtattcataacacatgaataccctttctcaagcaa |
11726655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 11726875 - 11726798
Alignment:
| Q |
290 |
caatgctgaaatgtttaacgtggatt-accatgttttgattgggtttccacatgggtgtgttcgatcagaattggaga |
366 |
Q |
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|||||||||||||||||| ||||||| || ||| |||||| ||||||||| ||| |||| ||||||||||||||||| |
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| T |
11726875 |
caatgctgaaatgtttaatgtggatttactatgctttgatggggtttccatatgaatgtgatcgatcagaattggaga |
11726798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 47059543 - 47059650
Alignment:
| Q |
290 |
caatgctgaaatgtttaacgtggattaccatgttttgattgggtttccacatgggtgtgttcgatcagaattggagacgacgtactatttgcttgatttg |
389 |
Q |
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|||||||||||| ||||| ||||||||| || |||||| ||||| ||||||||||||| || ||| |||||||||| | | || ||||||||||||| |
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| T |
47059543 |
caatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggcctatcttttgcttgatttg |
47059642 |
T |
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| Q |
390 |
aggcataa |
397 |
Q |
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|||||||| |
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| T |
47059643 |
aggcataa |
47059650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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