View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_high_14 (Length: 510)

Name: NF1204_high_14
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_high_14
NF1204_high_14
[»] chr4 (6 HSPs)
chr4 (9-344)||(6127037-6127362)
chr4 (9-257)||(44398274-44398520)
chr4 (9-311)||(43810830-43811128)
chr4 (391-481)||(6122418-6122508)
chr4 (336-392)||(6126796-6126852)
chr4 (265-314)||(55863268-55863317)
[»] chr2 (3 HSPs)
chr2 (9-315)||(14659000-14659300)
chr2 (162-289)||(13715382-13715509)
chr2 (162-291)||(4848502-4848631)
[»] chr8 (2 HSPs)
chr8 (162-306)||(4785004-4785148)
chr8 (265-313)||(30151834-30151882)
[»] chr5 (1 HSPs)
chr5 (166-308)||(39773709-39773851)
[»] chr3 (1 HSPs)
chr3 (162-307)||(45908147-45908290)
[»] chr7 (1 HSPs)
chr7 (265-312)||(38231772-38231819)
[»] chr6 (1 HSPs)
chr6 (265-313)||(7694622-7694670)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 6127362 - 6127037
Alignment:
Q  9 gaataatattgatataaaaattaccgttttactaatttagaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaacgacgggaaattga 108  Q
    |||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6127362 gaataatattgatataaaaattgccgtttcattaatttggaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaacgacggggaattga 6127263  T
Q  109 aggagtggaatgggtaattgaagaagtagagagattggatccggtaactagtaagagaaagaacaatgaaagagatagagttgataatggctaagattta 208  Q
    |||||||||||          |||| |||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  6127262 aggagtggaat----------agaattagagagatttgatcccgtaactagtgagagagagaacaatgaaagagatagagttgatgatggctaagattta 6127173  T
Q  209 gtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnnnnnttggtccatcatggaccaattcttcaattgatctaagctaaatg 308  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  6127172 gtgtggatagaatatgataagatttgatggatagtctaatctaaacattaaaaaaattggtccatcatggaccaattcttcaattgatctaagctaaatg 6127073  T
Q  309 acacctactttttatttaaggattgttttattagaa 344  Q
    ||||||||||||||||||||||||||||||||||||    
T  6127072 acacctactttttatttaaggattgttttattagaa 6127037  T

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Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 44398520 - 44398274
Alignment:
Q  9 gaataatattgatataaaaattaccgttttactaatttagaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaacgacgggaaattga 108  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  44398520 gaataatattgatataaaaattgccgtttcactaatttggaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaaggacagggaattga 44398421  T
Q  109 aggagtggaatgggtaattgaagaagtagagagattggatccggtaactagtaagagaaagaacaatgaaagagatagagttgataatggctaagattta 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||||| ||||||||||||||||    
T  44398420 aggagtggaatgggtaattgaggaagtagagagattggatccggttactagt--gagagagaacaatgaaagagatagagttggtaatggctaagattta 44398323  T
Q  209 gtgtggatagaatatgataaaatttgatggatagtctaatctaaacatt 257  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  44398322 gtgtggatagagtatgataagatttgatggatagtctaatctaaacatt 44398274  T

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Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 43811128 - 43810830
Alignment:
Q  9 gaataatattgatataaaaattaccgttttactaatttagaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaacgacgggaaattga 108  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||    
T  43811128 gaataatattgatataaaaactgccgtttcactaatttggaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaaggatggagaattga 43811029  T
Q  109 aggagtggaatgggtaattgaagaagtagagagattggatccggtaactagtaagagaaagaacaatgaaagagatagagttgataatggctaagattta 208  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||    || |||||||||||||||||||||||| | ||||||||||||||    
T  43811028 aggagtggaatgggtaattgaggaagtagagagattgaatccggttactagt----gagagaacaatgaaagagatagagttggtgatggctaagattta 43810933  T
Q  209 gtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnnnnnttggtccatcatggaccaattcttcaattgatctaagctaaatg 308  Q
    ||||||||||| |  ||||| |||||||||||||||||||||||| |||       ||||||||||||  ||||||| |||||||| || ||||||||||    
T  43810932 gtgtggatagagttcgataagatttgatggatagtctaatctaaatattaaaaaaattggtccatcataaaccaattattcaattggtccaagctaaatg 43810833  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 6122508 - 6122418
Alignment:
Q  391 tatgcaacaacatcaaattggagatggtctttgttgttgttctctagttaattgtgctagttaaaggaatcaagtcttgcaatgtcagtag 481  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6122508 tatgcaacaacatcaaattggagatggtgtttgttgttgttctctagttaattgtgctagttaaaggaatcaagtcttgcaatgccagtag 6122418  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 6126852 - 6126796
Alignment:
Q  336 ttattagaaagtggcttcttcgtacagaaatgaggtaggtgtcaattcaaaataata 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126852 ttattagaaagtggcttcttcgtacagaaatgaggtaggtgtcaattcaaaataata 6126796  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 55863268 - 55863317
Alignment:
Q  265 ttggtccatcatggaccaattcttcaattgatctaagctaaatgacacct 314  Q
    |||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  55863268 ttggtccatcatggaccaatacttcaatagatccaagctaaatgccacct 55863317  T

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Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 14659300 - 14659000
Alignment:
Q  9 gaataatattgatataaaaattaccgttttactaatttagaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaacgacgggaaattga 108  Q
    |||||||||||||||||||||| |||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  14659300 gaataatattgatataaaaattgccgtttcattaatttgaaatttgaaataataacaagcaaatgaaaaaatactaaagagtgaaaggacggggaattga 14659201  T
Q  109 aggagtggaatgggtaattgaagaagtagagagattggatccggtaactagtaagagaaagaacaatgaaagagatagagttgataatggctaagattta 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||      | ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14659200 aggagtggaatgggtaattgaggaagtagagagattggatccggt------tgagagagagaacaatgaaagagatagagttgatgatggctaagattta 14659107  T
Q  209 gtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnnnnnttggtccatcatggaccaattcttcaattgatctaagctaaatg 308  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||| ||||||||||    
T  14659106 gtgtggatagagtatgataagatttcatggatagtctaatctaaacattaaaaaaattgatccatcatggaccaattcttcaattgatccaagctaaatg 14659007  T
Q  309 acaccta 315  Q
     ||||||    
T  14659006 gcaccta 14659000  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 13715382 - 13715509
Alignment:
Q  162 agagaaagaacaatgaaagagatagagttgataatggctaagatttagtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnn 261  Q
    ||||||||| ||||||| |||||||||||| | |||||| ||||   |||||| |||| |||||||| ||||| ||||| ||||||||||||||||        
T  13715382 agagaaagagcaatgaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattaaaa 13715481  T
Q  262 nnnttggtccatcatggaccaattcttc 289  Q
       ||||| |||||||||||| ||||||    
T  13715482 aaattggtgcatcatggaccatttcttc 13715509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 4848631 - 4848502
Alignment:
Q  162 agagaaagaacaatgaaagagatagagttgataatggctaagatttagtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnn 261  Q
    ||||||||| ||||||| |||||||||||| | |||||| ||||  ||| ||| |||| |||||||| ||||||||||| | ||||||||||||||        
T  4848631 agagaaagagcaatgaaggagatagagttggtgatggcttagatagagtctgggtagagtatgataagatttgatggattgcctaatctaaacattaaaa 4848532  T
Q  262 nnnttggtccatcatggaccaattcttcaa 291  Q
       ||| ||||||||  |||||||||||||    
T  4848531 aaattgatccatcatacaccaattcttcaa 4848502  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 4785004 - 4785148
Alignment:
Q  162 agagaaagaacaatgaaagagatagagttgataatggctaagatttagtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnn 261  Q
    ||||||||| ||||||| |||||||||||| | |||||| ||||  ||||||| |||| |||||||| ||||| ||||| |||||||||| |||||        
T  4785004 agagaaagagcaatgaaggagatagagttggtgatggcttagatagagtgtgggtagagtatgataagatttggtggattgtctaatctacacattaaaa 4785103  T
Q  262 nnnttggtccatcatggaccaattcttcaattgatctaagctaaa 306  Q
       ||||||||||||||||||||||||||| || || ||||||||    
T  4785104 aaattggtccatcatggaccaattcttcaactggtccaagctaaa 4785148  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 30151882 - 30151834
Alignment:
Q  265 ttggtccatcatggaccaattcttcaattgatctaagctaaatgacacc 313  Q
    |||||||||||||||||||| ||||||| | || |||||||||| ||||    
T  30151882 ttggtccatcatggaccaatacttcaatgggtccaagctaaatgccacc 30151834  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 39773709 - 39773851
Alignment:
Q  166 aaagaacaatgaaagagatagagttgataatggctaagatttagtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnnnnnt 265  Q
    ||||| ||||||| |||||||||||| | |||||| ||||   |||||| |||| |||||||  ||||| ||||| ||||||||||||||||       |    
T  39773709 aaagagcaatgaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgatatgatttggtggattgtctaatctaaacattaaaaaaat 39773808  T
Q  266 tggtccatcatggaccaattcttcaattgatctaagctaaatg 308  Q
    ||| |||||||||||||||||||||| || || ||||||||||    
T  39773809 tggcccatcatggaccaattcttcaactggtccaagctaaatg 39773851  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 45908147 - 45908290
Alignment:
Q  162 agagaaagaacaatgaaagagatagagttgataatggctaagatttagtgtggatagaatatgataaaatttgatggatagtctaatctaaacattnnnn 261  Q
    ||||||||| ||||||| ||  |||||||| | |||||| ||||   |||||| |||| |||||||| ||||| ||||| ||||||||||||||||        
T  45908147 agagaaagagcaatgaagga--tagagttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattaaaa 45908244  T
Q  262 nnnttggtccatcatggaccaattcttcaattgatctaagctaaat 307  Q
       |||||||||||||||| |||| ||||| || || |||||||||    
T  45908245 aaattggtccatcatggacaaatttttcaactggtccaagctaaat 45908290  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 38231772 - 38231819
Alignment:
Q  265 ttggtccatcatggaccaattcttcaattgatctaagctaaatgacac 312  Q
    |||||||||||||||||||| ||||||| | || ||||||||||||||    
T  38231772 ttggtccatcatggaccaatacttcaatggttccaagctaaatgacac 38231819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 7694670 - 7694622
Alignment:
Q  265 ttggtccatcatggaccaattcttcaattgatctaagctaaatgacacc 313  Q
    |||||||||||||||||||| ||||||| | || |||||||||| ||||    
T  7694670 ttggtccatcatggaccaatacttcaatgggtccaagctaaatgccacc 7694622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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