View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_17 (Length: 502)
Name: NF1204_high_17
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 7959912 - 7960173
Alignment:
| Q |
35 |
tagttccttatacgtacgagatatcacattcacagctgtatggtgtaagaa-taattaatgacctgcctccacaacgtgacaactcttgatttctggact |
133 |
Q |
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| T |
7959912 |
tagttccttatacgtacgagatatcacattcacagctgtatggtgtaagaaattattaatgacctgcctccacaacgtgacaactcttgatttctggact |
7960011 |
T |
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| Q |
134 |
ccatccacatatatgaaactgacactatcaattgtaaatcacaaatacactactatactactacaatagaaaatttccatatcatacgat-nnnnnnnca |
232 |
Q |
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| T |
7960012 |
ccatccacatatatgaaactgacactatcaattgtaaatcacaaatac--------actactacaatagaaaatttccatatcatacgataaaaaaaaca |
7960103 |
T |
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| Q |
233 |
actaatattcttattttgaccaagttatcattagtcagacactacattaagttgacactattaaatgtag |
302 |
Q |
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| T |
7960104 |
actaatattcttattttgaccaagttatcattagtcagacactacattaagttgacactattaaatgtag |
7960173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 7960214 - 7960269
Alignment:
| Q |
298 |
tgtaggactatgaatctaatcctttttcaggatacttttcatgcaagatcaatcaa |
353 |
Q |
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| T |
7960214 |
tgtaggactatgaatctaatcctttttcaggatacttttcatgcaagatcaatcaa |
7960269 |
T |
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