View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_22 (Length: 475)
Name: NF1204_high_22
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 192 - 465
Target Start/End: Complemental strand, 5175000 - 5174727
Alignment:
| Q |
192 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5175000 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
5174901 |
T |
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| Q |
292 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174900 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
5174801 |
T |
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| Q |
392 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtctgtg |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5174800 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtttgtg |
5174727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 192 - 458
Target Start/End: Complemental strand, 52002800 - 52002537
Alignment:
| Q |
192 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
291 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| |
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| T |
52002800 |
cgttaaacaaaaaagtaacataataagattaatcaaggtattttatttgccaataatatttgtaccatcat---aaaagatagattctacggtttgtttc |
52002704 |
T |
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| Q |
292 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
391 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002703 |
cactaaatctttacttgatatttgatcaaattaaatccaaatactgaacacctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
52002604 |
T |
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| Q |
392 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttc |
458 |
Q |
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| T |
52002603 |
gcaattgaactttgtttttcgtccttaaccaagtattataagcatattgcatacgtctcttcttttc |
52002537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 5178336 - 5178208
Alignment:
| Q |
61 |
aaattgtacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcc |
160 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178336 |
aaattgtacaaggtctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcc |
5178237 |
T |
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| Q |
161 |
tctcaatctgatgatgggaaattttgatt |
189 |
Q |
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| T |
5178236 |
tctcaatctgatgatgggaaattttgatt |
5178208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 52008525 - 52008403
Alignment:
| Q |
67 |
tacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaa |
166 |
Q |
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|||||| |||||||||||||| | ||| || |||| ||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||| || |
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| T |
52008525 |
tacaagatctttacttagaagagaatgattttttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaa |
52008426 |
T |
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| Q |
167 |
tctgatgatgggaaattttgatt |
189 |
Q |
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| ||||||||||||||||||||| |
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| T |
52008425 |
tttgatgatgggaaattttgatt |
52008403 |
T |
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