View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_23 (Length: 451)
Name: NF1204_high_23
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 445
Target Start/End: Original strand, 19130436 - 19130846
Alignment:
| Q |
30 |
ccaataaaaccccatgacttgttgttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgagttaaaatggattt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19130436 |
ccaataaaaccccatgacttgttgttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgagttaaaatggattt |
19130535 |
T |
|
| Q |
130 |
atgatacccatagttaataaacaagtcccaccagcctagggcagcaacatcacctgcaggtaactgagaaattattagtaacaaatcacattcaaacagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19130536 |
atgatacccatagttaataaacaagtcccaccagcctagggcagcagcatcacctgcaggtaactgagaaattattagtaacaaatcacattcaaacagt |
19130635 |
T |
|
| Q |
230 |
gagttctgcaatgaatcatttcaaagtaacggtgctgtctcacattgtcatttacgaattttttaaaacaagagccaaagttaaaataagatgacatttt |
329 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19130636 |
gagttttgcaatgaatcatttcaaagtaacggtgctgtctcacattgtcatttacgaattttttaaaacaagagccaaagttaaaataagatgacatttt |
19130735 |
T |
|
| Q |
330 |
gtaattattagtaaaatcataaaaccaaatcaatacagaaagcannnnnnncaaaaccaaacaggcctttaaactatagtcactaatgtattccaacaaa |
429 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19130736 |
gtaattattagtaaaatcata-----aaatcaatacagaaagcatttttttcaaaaccaaacaggcctttaaactatagtcactaatgtattccaacaaa |
19130830 |
T |
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| Q |
430 |
gattaagtattatcta |
445 |
Q |
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||||||||||| |||| |
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| T |
19130831 |
gattaagtattgtcta |
19130846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 19125142 - 19125201
Alignment:
| Q |
57 |
gagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19125142 |
gagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgag |
19125201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 19523871 - 19523820
Alignment:
| Q |
54 |
ttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtcca |
105 |
Q |
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|||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
19523871 |
ttggagaaactgcaaacttgagtgggttgcaaacagcctttaaagatgtcca |
19523820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 19493968 - 19493906
Alignment:
| Q |
54 |
ttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgag |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
19493968 |
ttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgag |
19493906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 19517352 - 19517396
Alignment:
| Q |
51 |
ttgttggagaaactgcaaatttgagtgggttgcaaacaaccttca |
95 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
19517352 |
ttgttggagaaactccaaatttgagtggattgcaaacaaccttca |
19517396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 19530909 - 19530858
Alignment:
| Q |
54 |
ttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtcca |
105 |
Q |
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|||||||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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|
| T |
19530909 |
ttggagaaactgcaaacttgagtggtttgcaaacagcctttaaagatgtcca |
19530858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 19501990 - 19501949
Alignment:
| Q |
54 |
ttggagaaactgcaaatttgagtgggttgcaaacaaccttca |
95 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
19501990 |
ttggagaaactccaaatttgagtggattgcaaacaaccttca |
19501949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 42043004 - 42043145
Alignment:
| Q |
133 |
atacccatagttaataaacaagtcccaccagcctagggcagcaacatcacctgcaggtaactgagaaattattagtaacaaatcacattcaaacagtgag |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
42043004 |
atacccatagttaataaacaagtcccaccagcctagggcagcaacatcacctgcaggtaattgagaaattattagtaacaaatcacatttaaacagcgag |
42043103 |
T |
|
| Q |
233 |
ttctgcaatgaatcatttcaaagtaacggtgctgtctcacat |
274 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42043104 |
ttctgcaatgaatcatatcaaagtaacggtgctgtctcacat |
42043145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 269 - 445
Target Start/End: Original strand, 42044117 - 42044288
Alignment:
| Q |
269 |
tcacattgtcatttacgaattttttaaaacaagagccaaagttaaaataagatgacattttgtaattattagtaaaatcataaaaccaaatcaatacaga |
368 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
42044117 |
tcacattgtcatttacgaattttttaaaacaagaaccaaagttaaaataagatgacatttgataattattagtaaaatcataaaa-----tcaatacaga |
42044211 |
T |
|
| Q |
369 |
aagcannnnnnncaaaaccaaacaggcctttaaactatagtcactaatgtattccaacaaagattaagtattatcta |
445 |
Q |
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||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
42044212 |
aagcatttttttctaaaccaaacaggcctttaaactctaatcactaatgtattccaacaaagattaagtattgtcta |
42044288 |
T |
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