View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_24 (Length: 430)
Name: NF1204_high_24
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 19185471 - 19185785
Alignment:
| Q |
8 |
cgaagaatatgaaggtcgcgacgaaaagaatttgggtttagaaggaaagtggttattgaagagtggaagaacaataaggttgaatgagttccctccacca |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
19185471 |
cgaagaagatgaaggttgcgacgaaaagaatctgggtttagaaggaaagtggttatggaagagtggaagaacaaaaaggttgaatgagtaccctccacca |
19185570 |
T |
|
| Q |
108 |
atttcatgcatagggagaagtggaaagccttgtgttaggttcaaatcttatagggagaatggaaggtttattcttaaacaaatacctatacaagattttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19185571 |
atttcatgcatagggagaagtggaaagccttgtgttaggttcaaatcttatagggagaatggaaggtttattcttaaacaaataccaatacaagattttc |
19185670 |
T |
|
| Q |
208 |
ttcatgctcgtagagaagatggaagactcaccttgcattttattcagcatgatgtagaggaacaagannnnnnnggagataaagaagattttgatgggag |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
19185671 |
ttcatgctcatagagaagatggaagactcaccttgcattttattcagcatgatgtagaggaacaaaatttctttggagataaagaagattttgatgggag |
19185770 |
T |
|
| Q |
308 |
tggagaaagtaattc |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19185771 |
tggagaaagtaattc |
19185785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University