View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_3 (Length: 710)
Name: NF1204_high_3
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 590
Target Start/End: Original strand, 42543104 - 42543682
Alignment:
| Q |
13 |
aatataagcgtaataccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactt |
112 |
Q |
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| T |
42543104 |
aatataagcgtaataccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactt |
42543203 |
T |
|
| Q |
113 |
tatgatgccaaat-aatccaaatgacagtataagcaagagaaattacattaaaagtatcaaccggtaaaaaagacatgccacactttttctctgtaatcc |
211 |
Q |
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| T |
42543204 |
tatgatgccaaattaatccaaatgacagtataagcaagagaaattacattaaaagtatcaatcggtaaaaaagacatgccacactttttctctgtaatcc |
42543303 |
T |
|
| Q |
212 |
aaggagtgtttgcagccagtaaaagctctcacatacagacactcatacattcttaaccacttcttctattaattggatcatgcttaaatattacaagttg |
311 |
Q |
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| T |
42543304 |
aaggaatgtttgcagccagtaaaagctctcacatacagacactcatacattcttaaccacttcttctattaattggatcatgcttaaatattacaagttg |
42543403 |
T |
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| Q |
312 |
aacataacaatcttcagctattaattgatcaaaaatcaaactccttaacacacaatcttgtcactagaaaccactgaactcatagcaatagtaaaaacac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42543404 |
aacataacaatcttcagctattaattgatcaaaaatcaaactccttaacacacaatcttgtcactagaaaccactgaactcatagcaatagtaaaaacac |
42543503 |
T |
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| Q |
412 |
agtgaaagccaataattcagtttaaaaattatatttttgcaattctattaaacactccatcatcacacaaacaacaaaaaacctaatttgatgtnnnnnn |
511 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42543504 |
agtgaaagccaaaaattcagtttaaaaattatatttttgcaattctattaaacactccatcatcacacaaacaacaaaaaacctaatttgatgtaaaaaa |
42543603 |
T |
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| Q |
512 |
nncaaacaaagttagcagaaagaaacttactttgaagctgtttgtccatgtacctatcgaaaccccaaattaaacgaag |
590 |
Q |
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| T |
42543604 |
aacaaacaaagttagcagaaagaaacttactttgaagctgtttgtccatgtacctatcgaaaccccaaattaaaagaag |
42543682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 42543008 - 42543106
Alignment:
| Q |
28 |
ccccaattcgtaaaggaatgaaaaacggataaaagatataatgattaagctaaaattgagtaatcgacctccttcaactccactttatgatgccaaataa |
127 |
Q |
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||||||||| || |||||| |||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||| |
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| T |
42543008 |
ccccaattcatagaggaataaaaaacggataaaaaata--atgattaagctaaaattgagtaattgacttccttgaacttcactttatgatgccaaataa |
42543105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 24625544 - 24625508
Alignment:
| Q |
530 |
aaagaaacttactttgaagctgtttgtccatgtacct |
566 |
Q |
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| T |
24625544 |
aaagaaacttactctgaagctgtttgtccatgtacct |
24625508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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