View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_30 (Length: 406)
Name: NF1204_high_30
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 34835444 - 34835696
Alignment:
| Q |
13 |
aatatcacctggacgtcgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtc |
112 |
Q |
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| T |
34835444 |
aatatcacccggacgccgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtc |
34835543 |
T |
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| Q |
113 |
tgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagnnnnnnngtgtaaagcatgaaatgtacttacagaagcccatcta |
212 |
Q |
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| T |
34835544 |
tgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaagcatgaaatgtacttacagaagcccatcta |
34835643 |
T |
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| Q |
213 |
taaacaattgggaaaccttgaagaaagatttcatgaaacaatgagtgtccctt |
265 |
Q |
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| T |
34835644 |
taaacaattgggaaaccttgaagaaagatttcatgaaacaatgagtgtccctt |
34835696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 34821372 - 34821447
Alignment:
| Q |
183 |
gcatgaaatgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagt |
258 |
Q |
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| T |
34821372 |
gcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatgagt |
34821447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 35335534 - 35335468
Alignment:
| Q |
190 |
atgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatga |
256 |
Q |
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| T |
35335534 |
atgtacttacaggagcccatctataaacaattgggaagccttgtgaaaatatctcctgaaacaatga |
35335468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 35336366 - 35336285
Alignment:
| Q |
44 |
attgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttcaa |
125 |
Q |
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| T |
35336366 |
attgtgttccatgcataatcaaatgtactaagcagctgtgattctgttctcagggcatctccctcattttgcatctgttcaa |
35336285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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