View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_high_31 (Length: 406)

Name: NF1204_high_31
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_high_31
NF1204_high_31
[»] chr8 (3 HSPs)
chr8 (1-266)||(1430885-1431152)
chr8 (328-401)||(1431216-1431289)
chr8 (342-401)||(38069830-38069888)
[»] chr5 (8 HSPs)
chr5 (188-263)||(15388844-15388919)
chr5 (187-263)||(5249813-5249889)
chr5 (331-401)||(15388967-15389038)
chr5 (342-401)||(5813085-5813143)
chr5 (187-256)||(13611380-13611449)
chr5 (342-395)||(33642745-33642797)
chr5 (187-256)||(33642861-33642930)
chr5 (187-263)||(5812942-5813018)
[»] chr1 (1 HSPs)
chr1 (331-401)||(32905905-32905976)
[»] chr7 (2 HSPs)
chr7 (342-397)||(20419381-20419435)
chr7 (196-259)||(20437548-20437611)
[»] chr2 (2 HSPs)
chr2 (342-401)||(33470555-33470613)
chr2 (195-257)||(33470679-33470741)
[»] chr4 (1 HSPs)
chr4 (187-256)||(54132527-54132596)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 1430885 - 1431152
Alignment:
Q  1 ccgtaacaaacatatattttggagtagtaagttattat--agtataggtaaatatattggtgaattttaaatcgtaacaaactcaacaatatttgattct 98  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1430885 ccgtaacaaacatatattttggagtagtaagttattattaagtatagatagatatattggtgaattttaaatcgtaacaaactcaacaatatttgattct 1430984  T
Q  99 tttttaattgggaaaaaatattcttcttcaaaaatgaatttggaagnnnnnnntaatttggtcaagcagttatattaacataaattccattgttactttt 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||    
T  1430985 tttttaattaggaaaaaatattcttcttcaaaaatgaatttggaagaaaaaaataatttggtcaagtagttatattaacataaattccattgttactttt 1431084  T
Q  199 tatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaatagg 266  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1431085 tatgtatccaaattcacatcttatgatggagtttttaaagttaggaatgaagattcacacctaatagg 1431152  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 1431216 - 1431289
Alignment:
Q  328 aggatttgttatagttttttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1431216 aggatttgttatagttttttattgcattggataacaacttcacctttcatattatttttaagatattattggag 1431289  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 38069888 - 38069830
Alignment:
Q  342 ttttttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    |||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||||||    
T  38069888 ttttttattgcattggatattaacttcacctttcacatt-tttgtaagatattattggag 38069830  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 15388844 - 15388919
Alignment:
Q  188 ttgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaat 263  Q
    ||||| |||||||||||||||| |||||||  ||||||| | ||||| |||||| ||||||||||||||| |||||    
T  15388844 ttgttcctttttatgtattcaagttcacatcatatgatgaaatttttgaagttaagaatgaagattcacacctaat 15388919  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 5249813 - 5249889
Alignment:
Q  187 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaat 263  Q
    |||||| ||||||||| |||||| || ||||  ||||||| | |||||||||||| ||||||||||||||| |||||    
T  5249813 attgttcctttttatgcattcaactttacatcatatgatgaaatttttaaagttaagaatgaagattcacacctaat 5249889  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 15388967 - 15389038
Alignment:
Q  331 atttgttatagttt--tttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||||| ||| ||||||  ||||||||||||    
T  15388967 atttgttatagtttcttttattgcattggatattaacttcacctttcacatt-tttttataatattattggag 15389038  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 5813085 - 5813143
Alignment:
Q  342 ttttttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    |||||||||| ||||||||  |||||||||||||| ||| ||| ||||||||||||||||    
T  5813085 ttttttattgtattggatattaacttcacctttcacatt-tttgtaagatattattggag 5813143  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 13611449 - 13611380
Alignment:
Q  187 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 256  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  13611449 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 13611380  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 33642797 - 33642745
Alignment:
Q  342 ttttttattgcattggataacaacttcacctttcatattatttttaagatatta 395  Q
    |||||||||||||||||||  || ||| ||||||||||| ||||||||||||||    
T  33642797 ttttttattgcattggatattaagttctcctttcatatt-tttttaagatatta 33642745  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 33642930 - 33642861
Alignment:
Q  187 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 256  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  33642930 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 33642861  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 5812942 - 5813018
Alignment:
Q  187 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaat 263  Q
    |||||| ||||||||| |||||| || ||||  ||||||  | || ||||||||| ||||||||||||||| |||||    
T  5812942 attgttcctttttatgcattcaagtttacatcatatgataaaattattaaagttaagaatgaagattcacacctaat 5813018  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 32905905 - 32905976
Alignment:
Q  331 atttgttatagtttt--ttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    |||||||||||||||  |||||||||||||||  || ||||||||||| ||| ||| ||||||||||||||||    
T  32905905 atttgttatagttttttttattgcattggatattaatttcacctttcacatt-tttgtaagatattattggag 32905976  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 20419381 - 20419435
Alignment:
Q  342 ttttttattgcattggataacaacttcacctttcatattatttttaagatattatt 397  Q
    |||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||    
T  20419381 ttttttattgcattggatattaacttcacctttcacatt-tttgtaagatattatt 20419435  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 20437548 - 20437611
Alignment:
Q  196 ttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatc 259  Q
    ||||||| |||  |||||||||  ||||||| | |||||||||||| |||||||||||||||||    
T  20437548 ttttatgcatttcaattcacatcatatgatgaaatttttaaagttaagaatgaagattcacatc 20437611  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 33470613 - 33470555
Alignment:
Q  342 ttttttattgcattggataacaacttcacctttcatattatttttaagatattattggag 401  Q
    |||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||| ||||    
T  33470613 ttttttattgcattggatattaacttcacctttcacatt-tttgtaagatattatcggag 33470555  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 33470741 - 33470679
Alignment:
Q  195 tttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcaca 257  Q
    |||||||| |||||| |||||||  ||||||| |  ||||||||||| |||||||||||||||    
T  33470741 tttttatgcattcaagttcacatcatatgatgaaaattttaaagttaagaatgaagattcaca 33470679  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 54132596 - 54132527
Alignment:
Q  187 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 256  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  54132596 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 54132527  T

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