View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_32 (Length: 401)
Name: NF1204_high_32
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 86 - 277
Target Start/End: Original strand, 41220409 - 41220595
Alignment:
| Q |
86 |
gagtcacagtcgcacccctagctcaaaataggttacacagaccggcacggtccacggcctggtttacatcaagtttatgctagctcaaaatgtcaaacta |
185 |
Q |
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| T |
41220409 |
gagtcacagtcgcacccctagctcaaaataggttacacagaccggcacggtccacggcctggtttacatcaagtttaggctagctcaaaatgtcaaacta |
41220508 |
T |
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| Q |
186 |
tggatcataaagaaaacaacatttaactccaaaataaataatgatttaagtataattatttcaagaatagattaaatcaaaagatgcgattt |
277 |
Q |
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| T |
41220509 |
tggatcataaa-aaaacaacatttagctcca----aaataatgatttaagtataattatttcaagaatagattaaatcaaaagatgcgattt |
41220595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 41220762 - 41220827
Alignment:
| Q |
264 |
aaaagatgcgatttgggtctaccagagtggttcaatcgtaactccaactcgctcttttacacacac |
329 |
Q |
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| T |
41220762 |
aaaagatgcgatttgggtctaccagagtggttcaatcgtaactccaactctctcttttacacacac |
41220827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 41220850 - 41220894
Alignment:
| Q |
348 |
cattttagacctatcaatttactcaattaaatgcagtagtattat |
392 |
Q |
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| T |
41220850 |
cattttagacctatcaatttactcaattaaatgcagtaatattat |
41220894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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