View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_33 (Length: 401)
Name: NF1204_high_33
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_33 |
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| [»] scaffold0051 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 78 - 372
Target Start/End: Complemental strand, 21916170 - 21915874
Alignment:
| Q |
78 |
aaaggtagaacaattctctttgtgctgcatcaaatacactgcacttgtttaannnnnnn--agctatgcatgtgttttggaccaaacnnnnnnnntt-gg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |
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| T |
21916170 |
aaaggtagaacaattctctttgtgctgcatcaaatacactgcacttgtttaatttttttttagctatgcatgtgttttggaccaaacaatttttttttgg |
21916071 |
T |
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| Q |
175 |
atatgtttggtgtggcacttgccacaccaggacctt-aacaggtccgtccctgaatggagccaaagnnnnnnnnttctttcttccgatgctttgtcaagt |
273 |
Q |
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|||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
21916070 |
atat-tttggtgtgagacttgccacaccaggacctttaacaggtccgtccctgcatggagccaaagaaaaaaa-ttctttcttccgatgctttgtcaagt |
21915973 |
T |
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| Q |
274 |
aatttatcttctgggaagtgcttacctatagcttttgattctcatatgcttgaagctttcatggcttctcctcaccaaataaattttgctgctattgtt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21915972 |
aatttatcttctgggaagtgcttacctatagcttttgattctcatatgcttgaagctttcatggcttctcctcaccaaataaattttgctgctattgtt |
21915874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 18114205 - 18114120
Alignment:
| Q |
76 |
gcaaaggtagaacaattctctttgtgctgcatcaaatacactgcacttgtttaannnnnnnagctatgcatgtgttttggaccaaa |
161 |
Q |
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|||||||||||||||| ||||||||| |||||||||| |||| |||| |||||| |||||||||||||||||||||||| |
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| T |
18114205 |
gcaaaggtagaacaatactctttgtgttgcatcaaatgcactacactagtttaatttttttggctatgcatgtgttttggaccaaa |
18114120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 4136977 - 4136922
Alignment:
| Q |
171 |
ttggatatgtttggtgtggcacttgccacaccaggaccttaacaggtccgtccctg |
226 |
Q |
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| T |
4136977 |
ttggacatgtttggtgtgacacttgccacaccaggaccttaacaggtccgcccctg |
4136922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 17109403 - 17109448
Alignment:
| Q |
173 |
ggatatgtttggtgtggcacttgccacaccaggaccttaacaggtc |
218 |
Q |
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| T |
17109403 |
ggatatgtttggtgtggcacttgccacaccaggaccttaataggtc |
17109448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 17109273 - 17109309
Alignment:
| Q |
76 |
gcaaaggtagaacaattctctttgtgctgcatcaaat |
112 |
Q |
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| T |
17109273 |
gcaaaggtagaacaatcctctttgtgctgcatcaaat |
17109309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 45867968 - 45868049
Alignment:
| Q |
139 |
ctatgcatgtgttttggaccaaacnnnnnnnnttggatatgtttggtgtggcacttgccacaccaggaccttaacaggtccg |
220 |
Q |
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| T |
45867968 |
ctatgcttgtgttttggaccaaacaaaaaaaattggatatgattggtgtggcacttaccacatcaggaccttaacaggtccg |
45868049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 15142 - 15177
Alignment:
| Q |
76 |
gcaaaggtagaacaattctctttgtgctgcatcaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15142 |
gcaaaggtagaacaattctctttgtgctgcatcaaa |
15177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 17151 - 17206
Alignment:
| Q |
171 |
ttggatatgtttggtgtggcacttgccacaccaggaccttaacaggtccgtccctg |
226 |
Q |
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|||||||||||||||||||||||| | ||||||| || |||||||||||| ||||| |
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| T |
17151 |
ttggatatgtttggtgtggcactttctacaccagaactttaacaggtccgcccctg |
17206 |
T |
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