View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_42 (Length: 369)
Name: NF1204_high_42
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 78 - 315
Target Start/End: Original strand, 56229598 - 56229835
Alignment:
| Q |
78 |
atgaatggaagaatattaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaaga |
177 |
Q |
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| T |
56229598 |
atgaatggaagaatatcaatgtgttgtttttcctttcaattatgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaaga |
56229697 |
T |
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| Q |
178 |
aagttacacactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatg |
277 |
Q |
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| T |
56229698 |
aagttacacactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatg |
56229797 |
T |
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| Q |
278 |
ttattattgggaaccttgacactggtaaaattttatca |
315 |
Q |
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| T |
56229798 |
ttattattgggaaccttgacactggtaaaattttatca |
56229835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 39186995 - 39187207
Alignment:
| Q |
93 |
ttaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttacacactaca |
192 |
Q |
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| T |
39186995 |
ttaatgttttgttttttctttccatcttgtgttttatattgtagagcatccaaacgttgtgtcagtgttgttaaaccgaggaagaaagttacacactaca |
39187094 |
T |
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| Q |
193 |
cactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttattattgggaacc |
292 |
Q |
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| T |
39187095 |
cactcatgggaattcatgtcaatggaacacaatggtgtggctccttctcattccctctttagaaaagcaagatacggtgaagatgttattattgggaatc |
39187194 |
T |
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| Q |
293 |
ttgacactggtaa |
305 |
Q |
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| T |
39187195 |
ttgattctggtaa |
39187207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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