View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_high_5 (Length: 682)

Name: NF1204_high_5
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_high_5
NF1204_high_5
[»] chr7 (2 HSPs)
chr7 (1-372)||(12892717-12893083)
chr7 (587-667)||(11683092-11683172)
[»] chr5 (1 HSPs)
chr5 (588-667)||(6114901-6114980)
[»] chr2 (2 HSPs)
chr2 (589-667)||(20941030-20941108)
chr2 (587-639)||(361750-361802)
[»] chr6 (2 HSPs)
chr6 (587-667)||(31209169-31209249)
chr6 (625-665)||(4314621-4314661)
[»] scaffold0722 (1 HSPs)
scaffold0722 (384-420)||(4195-4231)
[»] chr4 (1 HSPs)
chr4 (458-494)||(10542698-10542734)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 12892717 - 12893083
Alignment:
Q  1 ttgataaactgtaccatccatatactcgcgtctgnnnnnnnnnnnnnnggaacacgattgagtgaggattgagagggattaggggaattaaggttttgag 100  Q
    ||||||||||||||||||||||||||||||||||              |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  12892717 ttgataaactgtaccatccatatactcgcgtctgaaaaaaggaaaaaaggaacacgattgagagaggattgagagggattagggaaattaaggttttgag 12892816  T
Q  101 ggatttaccgacggcgagtgtttttccggcgagggtttcgacggagacgcggcgaccgacgggggagagtagttcccagagaccgtgaactcccattttc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12892817 ggatttaccgacggcaagtgtttttccggcgagggtttcgacggagacgcggcgaccgacgggggagagtagttcccagagaccgtgaactcccattttc 12892916  T
Q  201 cggttgaaaacgatatgctgttgatgtcaacacagacaaggggaaataaatattttgtaaggaattatgtacacgagtatcttata----tctatatcta 296  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||    || |||||||    
T  12892917 cggttgaaaacgatatgctgttgatgtcaacacagacaa-gggaactaaatattttgtaaggaattaagtacacgggtatcttatacgtgtcgatatcta 12893015  T
Q  297 tttgatatgcctccatacgtgttcgaagagcctcagacaatgagtgaattatcaacttcctatttgaatttgcagt 372  Q
    | |||||||||||        || ||||||  || | |||||||||||||||||||||||| ||||||||||||||    
T  12893016 tctgatatgcctc--------ttggaagagagtctgtcaatgagtgaattatcaacttcctctttgaatttgcagt 12893083  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 667
Target Start/End: Original strand, 11683092 - 11683172
Alignment:
Q  587 acatccttacatttcattaagaaacatcaaactagtccatgactcttctcctttccactaaaaccttcactatcttcatct 667  Q
    |||||||||||||| ||| ||| ||||||||| || |  ||| ||||||||||||| ||||||||||||| ||||||||||    
T  11683092 acatccttacattttattcagacacatcaaacaagactctgattcttctcctttccgctaaaaccttcaccatcttcatct 11683172  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 667
Target Start/End: Original strand, 6114901 - 6114980
Alignment:
Q  588 catccttacatttcattaagaaacatcaaactagtccatgactcttctcctttccactaaaaccttcactatcttcatct 667  Q
    |||||| |||||| ||| ||||||||||| |  |||| ||||||||||||||||| |||||||||| || ||||||||||    
T  6114901 catcctcacattttattcagaaacatcaatccggtccttgactcttctcctttccgctaaaaccttaaccatcttcatct 6114980  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 20941030 - 20941108
Alignment:
Q  589 atccttacatttcattaagaaacatcaaactagtccatgactcttctcctttccactaaaaccttcactatcttcatct 667  Q
    ||||| |||||||| | ||| ||||||||| ||||  ||||||||||||||||| ||||||||||||| | ||||||||    
T  20941030 atcctcacatttcactcagacacatcaaacaagtctctgactcttctcctttccgctaaaaccttcacaaacttcatct 20941108  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 639
Target Start/End: Original strand, 361750 - 361802
Alignment:
Q  587 acatccttacatttcattaagaaacatcaaactagtccatgactcttctcctt 639  Q
    |||||||||||||||||| | | ||||||||| ||||| ||||| ||||||||    
T  361750 acatccttacatttcatttatacacatcaaacaagtccttgactattctcctt 361802  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 667
Target Start/End: Original strand, 31209169 - 31209249
Alignment:
Q  587 acatccttacatttcattaagaaacatcaaactagtccatgactcttctcctttccactaaaaccttcactatcttcatct 667  Q
    |||||||||||||||||| ||| ||||||||  ||| | | ||||||| |||| || ||||||| ||||| ||||||||||    
T  31209169 acatccttacatttcattcagacacatcaaataagttcctcactcttcaccttcccgctaaaactttcaccatcttcatct 31209249  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 665
Target Start/End: Complemental strand, 4314661 - 4314621
Alignment:
Q  625 atgactcttctcctttccactaaaaccttcactatcttcat 665  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  4314661 atgactcttctccttcccgctaaaaccttcacaatcttcat 4314621  T

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Target: scaffold0722 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 4195 - 4231
Alignment:
Q  384 tttgtcctctaatttgtcgaaatatcaaattaatcct 420  Q
    |||||| |||||||||||||||||||| |||||||||    
T  4195 tttgtcatctaatttgtcgaaatatcacattaatcct 4231  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 10542698 - 10542734
Alignment:
Q  458 tgatgtgtcaatctgcatgttgtgttgtgatatccac 494  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  10542698 tgatgtgtcaatctgcatgttgtgctgtaatatccac 10542734  T

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