View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_6 (Length: 610)
Name: NF1204_high_6
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_6 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 29 - 610
Target Start/End: Original strand, 34136904 - 34137485
Alignment:
| Q |
29 |
aggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136904 |
aggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaac |
34137003 |
T |
|
| Q |
129 |
ttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaaaatatacttttgaataatcgaaatgg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34137004 |
ttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaaaatatacttttgaataatctaaatgg |
34137103 |
T |
|
| Q |
229 |
ccattgaagatgaaatatataactacctgaagtgtgaagggtattgtggggatggattagaccattgaataacttgatcatcgttttcatcagaattcag |
328 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34137104 |
cgattgaagatgaaatatataactacctgaagtgtgaagggaattgtggggatggattagaccattgaataaattgatcatcgttttcatcagaattcag |
34137203 |
T |
|
| Q |
329 |
aggaaccaaagtgggatcgttggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137204 |
aggaaccaaagtgggatcgttggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatt |
34137303 |
T |
|
| Q |
429 |
tcatctctagcaatcttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggt |
528 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137304 |
tcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggt |
34137403 |
T |
|
| Q |
529 |
ttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaac |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137404 |
ttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaac |
34137485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 249 - 610
Target Start/End: Original strand, 34133213 - 34133574
Alignment:
| Q |
249 |
aactacctgaagtgtgaagggtattgtggggatggattagaccattgaataacttgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgt |
348 |
Q |
| |
|
||||||||||| |||| ||| ||||| || ||| |||||| |||||||||||| |||||| | |||||||||| || ||||||| || || ||||| | |
|
|
| T |
34133213 |
aactacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactccgaggaactaatgtaggatctt |
34133312 |
T |
|
| Q |
349 |
tggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaatcttcct |
448 |
Q |
| |
|
| |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||| |||| | |
|
|
| T |
34133313 |
gagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgacctcatctctagcaaccttctt |
34133412 |
T |
|
| Q |
449 |
cttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccc |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34133413 |
cttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccc |
34133512 |
T |
|
| Q |
549 |
cactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaac |
610 |
Q |
| |
|
||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34133513 |
cactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaac |
34133574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 249 - 610
Target Start/End: Original strand, 34140790 - 34141148
Alignment:
| Q |
249 |
aactacctgaagtgtgaagggtattgtggggatggattagaccattgaataacttgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgt |
348 |
Q |
| |
|
||||||||||||| |||||||||| | || | ||||||| |||||||||||||| ||||||| ||||||| || | | ||||||| |||| | || | |
|
|
| T |
34140790 |
aactacctgaagtttgaagggtatggaggtgttggattacaccattgaataactcgatcatcattttcatgaggagtgagaggaaagaaaggg---tcat |
34140886 |
T |
|
| Q |
349 |
tggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaatcttcct |
448 |
Q |
| |
|
||| | |||||||| |||||||||| ||| |||||||| |||||| |||| || |||||||||||||||||| |||| ||||||||||||| |||| | |
|
|
| T |
34140887 |
tggtgtaaaaatcaaacacttctttcatgtctctaacattcttggtgagttcagtgtcataataaccagttggaatgatctcatctctagcaaccttctt |
34140986 |
T |
|
| Q |
449 |
cttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccc |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||| ||| |
|
|
| T |
34140987 |
cttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaagaatccc |
34141086 |
T |
|
| Q |
549 |
cactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaac |
610 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
34141087 |
cacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaac |
34141148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 276 - 599
Target Start/End: Original strand, 34126967 - 34127290
Alignment:
| Q |
276 |
ggggatggattagaccattgaataacttgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgttggcgagaaaatcaagcacttctttcc |
375 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |
|
|
| T |
34126967 |
ggggacggattagaccattgaataacttgatcatcattttcatcacaattcagaggaaccaaagtgggatctctggcgaaaaaatcaaacacttctatcc |
34127066 |
T |
|
| Q |
376 |
agtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaatcttcctcttctcctccaaactctgagcaaagaa |
475 |
Q |
| |
|
||| || ||||| |||||||| ||| ||||| |||||||| |||| |||| |||||||| |||| |||| | |||||||||||||| ||||||||||| |
|
|
| T |
34127067 |
agtttcttacattcttggtgtgctctttatcaaaataaccaattggtgtgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaa |
34127166 |
T |
|
| Q |
476 |
caatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttcc |
575 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||| ||||| ||||| || ||||||||||||||||| | | |
|
|
| T |
34127167 |
caatctagcagcttcatcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttc |
34127266 |
T |
|
| Q |
576 |
ttcactaagttttcaatatcagat |
599 |
Q |
| |
|
||||| ||| | |||||| ||||| |
|
|
| T |
34127267 |
ttcaccaagctatcaatagcagat |
34127290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 34131213 - 34131386
Alignment:
| Q |
29 |
aggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | |||||||||||| |||||| |
|
|
| T |
34131213 |
aggatagtggttgaatctaataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaac |
34131312 |
T |
|
| Q |
129 |
ttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaa |
202 |
Q |
| |
|
| || |||| |||||||| ||||| | |||||||||||| |||||||||||| |||| |||| ||||||||| |
|
|
| T |
34131313 |
ctatatgccagcttttccacctcttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaa |
34131386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 256 - 566
Target Start/End: Original strand, 34143277 - 34143587
Alignment:
| Q |
256 |
tgaagtgtgaagggtattgtggggatggattagaccattgaataacttgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgttggcgag |
355 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| ||| | | | ||||||||||||| ||||||||||||||||||||||||||| || || || | ||| |
|
|
| T |
34143277 |
tgaagtgtggagggtattgaggggatggattagtccagtaagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
34143376 |
T |
|
| Q |
356 |
aaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaatcttcctcttctcc |
455 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||||||| |||||||||| |||||||| | | | |||||| | | ||||||| |||| ||| |
|
|
| T |
34143377 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggtaatcttcttcttatcc |
34143476 |
T |
|
| Q |
456 |
tccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctt |
555 |
Q |
| |
|
|||| ||||| || ||||||| |||| |||||| || | | | |||| ||| | | |||||| ||||| ||||| ||||||||||||||||| || | |
|
|
| T |
34143477 |
tccaggctctgtgcgaagaacatcttagaagcttcttccattttgagccttagagtgggagggacaccatgatttgtaacttggaagaaaccccattcct |
34143576 |
T |
|
| Q |
556 |
tgcatgcactt |
566 |
Q |
| |
|
|||| |||||| |
|
|
| T |
34143577 |
tgcaagcactt |
34143587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 34140062 - 34140237
Alignment:
| Q |
29 |
aggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaac |
128 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||| | ||| |
|
|
| T |
34140062 |
aggatagtagttgaatcttataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataac |
34140161 |
T |
|
| Q |
129 |
ttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaaaa |
204 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||||| |||| | || || ||||| |||| ||||||||||| |
|
|
| T |
34140162 |
ttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaaaa |
34140237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 34126071 - 34126244
Alignment:
| Q |
29 |
aggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaac |
128 |
Q |
| |
|
||||||||| |||| ||||| | |||||| ||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
34126071 |
aggatagtgattgattctaaacacgctagttgtatccttgaagaattcttcaaacctcattgcttcaagccctaagctcaaagctattaactccagcaac |
34126170 |
T |
|
| Q |
129 |
ttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaa |
202 |
Q |
| |
|
|| | ||||| ||||||||||| | | |||||||||||| |||| |||||| ||||| |||| ||||||||| |
|
|
| T |
34126171 |
ttagaggccaaattttccatctccttaatatactcttcaattatattcctgctcatgttgacattaattttaaa |
34126244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 34142708 - 34142847
Alignment:
| Q |
29 |
aggatagtggttgaatctaataaagctagtgtgatctttga---agaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagc |
125 |
Q |
| |
|
|||||| ||||| | ||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| | |||||| ||||| ||| |
|
|
| T |
34142708 |
aggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctctagc |
34142807 |
T |
|
| Q |
126 |
aacttgtaagccaacttttccatctcttcattatactctt |
165 |
Q |
| |
|
||| | | || | |||||||||||||| | ||||||||| |
|
|
| T |
34142808 |
aacgtaaaggctagcttttccatctctttaatatactctt |
34142847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University