View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_64 (Length: 307)
Name: NF1204_high_64
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 9451577 - 9451780
Alignment:
| Q |
20 |
aattcccaatgtgggttcagattcccaatgtcacttctccattgcaattctactatccttttctcaattctaattccaattcatcaactacttctaaagc |
119 |
Q |
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| T |
9451577 |
aattcccaatgtgggttctaattcccaatgtcacttctccattgcaattctactatccttttctcaattctaattccaattcatcaactacttctaaagc |
9451676 |
T |
|
| Q |
120 |
agcttatttgtagcattcatgtaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatattttggcctctgagaaaccat |
219 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451677 |
agctcatttgtagcattcatggaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatattttggcctctgagaaaccat |
9451776 |
T |
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| Q |
220 |
tcac |
223 |
Q |
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|||| |
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| T |
9451777 |
tcac |
9451780 |
T |
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