View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_66 (Length: 307)
Name: NF1204_high_66
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 34140950 - 34141223
Alignment:
| Q |
24 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140950 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
34141049 |
T |
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| Q |
124 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
223 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34141050 |
caaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaact |
34141149 |
T |
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| Q |
224 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
297 |
Q |
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||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
34141150 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 34137287 - 34137560
Alignment:
| Q |
24 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
123 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
34137287 |
aaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagact |
34137386 |
T |
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| Q |
124 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
223 |
Q |
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| T |
34137387 |
cgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaact |
34137486 |
T |
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| Q |
224 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137487 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 34133376 - 34133649
Alignment:
| Q |
24 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
123 |
Q |
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||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
34133376 |
aaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagact |
34133475 |
T |
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| Q |
124 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
223 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
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| T |
34133476 |
caaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaact |
34133575 |
T |
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| Q |
224 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
297 |
Q |
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||| ||| | |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
34133576 |
gcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 34127115 - 34127376
Alignment:
| Q |
36 |
tgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactcc |
135 |
Q |
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||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| | |
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| T |
34127115 |
tgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctc |
34127214 |
T |
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| Q |
136 |
atggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaacttcattgtggaat |
235 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| |||||||||||| ||| | ||||||||| ||||||| |
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| T |
34127215 |
atggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaat |
34127314 |
T |
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| Q |
236 |
attggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
297 |
Q |
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||||| |||||||||||| |||||||||||| |||||||||||| || |||||||||||||| |
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| T |
34127315 |
attggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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