View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_high_67 (Length: 306)

Name: NF1204_high_67
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_high_67
NF1204_high_67
[»] chr1 (3 HSPs)
chr1 (1-240)||(8758754-8758993)
chr1 (1-238)||(8749493-8749730)
chr1 (18-234)||(8767087-8767303)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8758993 - 8758754
Alignment:
Q  1 tattttatgatgatgaatttcttttggttttgcagcaaaccaggcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaaca 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758993 tattttatgatgatgaatttcttttgttttggcagcaaaccaggcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaaca 8758894  T
Q  101 agacattatgagatggaagctgctgcagctactaatgtgatcctcctctggtcagctgctactagtttcacaccaattgttggagcttttcttgctgatt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758893 agacattatgagatggaagctgctgcagctaccaatgtgatcctcctctggtcagctgctactagtttcacaccaattgttggagcttttcttgctgatt 8758794  T
Q  201 cctactttggtcgctaccctaccattgtctttggatctct 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  8758793 cctactttggtcgctaccttaccattgtctttggatctct 8758754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8749730 - 8749493
Alignment:
Q  1 tattttatgatgatgaatttcttttggttttgcagcaaaccaggcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaaca 100  Q
    |||||| ||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8749730 tattttttgatgatcaatttcttttgttttggcagctacccaggcatttgagaaaatggcaacttttggaatattgccaaacatgattctgtatttaaca 8749631  T
Q  101 agacattatgagatggaagctgctgcagctactaatgtgatcctcctctggtcagctgctactagtttcacaccaattgttggagcttttcttgctgatt 200  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| | || ||||||||||| ||||    
T  8749630 agacattatgggatggaagctgcaacagctactaatgtgatcctccgctggtcagcagctactaattttacaccaattatcggtgcttttcttgccgatt 8749531  T
Q  201 cctactttggtcgctaccctaccattgtctttggatct 238  Q
    |||| |||||||||||| ||||||| | ||||||||||    
T  8749530 cctattttggtcgctacgctaccatcgcctttggatct 8749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8767303 - 8767087
Alignment:
Q  18 tttcttttggttttgcagcaaaccaggcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaacaagacattatgagatgga 117  Q
    |||| |||| ||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8767303 tttcctttgttttggcagcgagccagtcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaacaagacattatgggatgga 8767204  T
Q  118 agctgctgcagctactaatgtgatcctcctctggtcagctgctactagtttcacaccaattgttggagcttttcttgctgattcctactttggtcgctac 217  Q
    | || ||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| |||||||| ||||||    
T  8767203 aactcctgtagctaccaatgtgatcctcctctggtcagcagctactaatttcacaccaattcttggtgcttttcttgctgattcttactttggccgctac 8767104  T
Q  218 cctaccattgtctttgg 234  Q
    |||||||| ||||||||    
T  8767103 cctaccatcgtctttgg 8767087  T

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