View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_high_70 (Length: 287)

Name: NF1204_high_70
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_high_70
NF1204_high_70
[»] chr3 (6 HSPs)
chr3 (29-287)||(53059401-53059656)
chr3 (40-287)||(53068638-53068882)
chr3 (217-287)||(37418891-37418961)
chr3 (56-164)||(37418697-37418805)
chr3 (122-187)||(53062573-53062638)
chr3 (216-283)||(53062661-53062728)
[»] chr7 (1 HSPs)
chr7 (103-186)||(31014160-31014243)
[»] chr4 (1 HSPs)
chr4 (190-285)||(34036005-34036100)
[»] chr2 (2 HSPs)
chr2 (41-163)||(6687596-6687718)
chr2 (219-287)||(6687804-6687872)
[»] chr1 (1 HSPs)
chr1 (44-157)||(48828312-48828422)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 53059401 - 53059656
Alignment:
Q  29 acaatcctcggagacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059401 acaatcctcggagacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcg 53059500  T
Q  129 actttctcttgtcctttcccattctagaggaattgcaaacaaataaagtaaaggtatttcctcctttgagggagtttgttcctaaaacagcagacaagat 228  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53059501 actttctcttgttctttcccattctggaggaattgcaaacaaataaagtaaaggtatt---tcctttgagggagtttgttcctaaaacagcagacaagat 53059597  T
Q  229 caaatgcttgctcaatttggtgacagccaagctttctgataacaaacctattcctctct 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53059598 caaatgcttgcccaatttggtgacagccaagctttctgataacaaacctattcctctct 53059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 40 - 287
Target Start/End: Original strand, 53068638 - 53068882
Alignment:
Q  40 agacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttg 139  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||  |||||||||||||| |||| ||||||||||||| ||     
T  53068638 agacattcctcaaataaatagtactatttcactactcaaaactctccacttggatggtgtttatttcaacactcatacacagctcatcgactttctatta 53068737  T
Q  140 tcctttcccattctagaggaattgcaaacaaataaagtaaaggtatttcctcctttgagggagtttgttcctaaaacagcagacaagatcaaatgcttgc 239  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068738 tcctttccccttctagaggaattgcaaacaaataatgtaaatgtat---atcctttgagggagtttgttcctaaaacagcagacaagatcaaatgcttgc 53068834  T
Q  240 tcaatttggtgacagccaagctttctgataacaaacctattcctctct 287  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||    
T  53068835 ccaatttggtgacatccaagctttctgataacaaacctattcctctct 53068882  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 37418891 - 37418961
Alignment:
Q  217 agcagacaagatcaaatgcttgctcaatttggtgacagccaagctttctgataacaaacctattcctctct 287  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||    
T  37418891 agcagacaagatcaaatgcttgcccaatttggtgacagccaagctttatgatagcgaacctattcctctct 37418961  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 37418697 - 37418805
Alignment:
Q  56 aataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctag 155  Q
    ||||||||||||||||  ||||||||||||||||| ||| | |||  |||||  |||| ||  |  ||||| ||||||||||| ||||||||||||||||    
T  37418697 aataatactatttcacggctcaaaactctccacttagattgtgttcatttcatgactcgtacgcttatcattgactttctcttttcctttcccattctag 37418796  T
Q  156 aggaattgc 164  Q
    |||||||||    
T  37418797 aggaattgc 37418805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 53062573 - 53062638
Alignment:
Q  122 atcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataaagtaaaggtattt 187  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  53062573 atcatcaacttgctcttatcctttcccattctagaggaattgcaaacaaataatgtatatgtattt 53062638  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 53062661 - 53062728
Alignment:
Q  216 cagcagacaagatcaaatgcttgctcaatttggtgacagccaagctttctgataacaaacctattcct 283  Q
    |||| ||||||||||||  ||||| |||||| |||||||||||||||||||||| |||| ||||||||    
T  53062661 cagcggacaagatcaaacacttgcccaatttagtgacagccaagctttctgatagcaaagctattcct 53062728  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 31014160 - 31014243
Alignment:
Q  103 tttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataaagtaaaggtatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  31014160 tttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgaaaacacattaagtaaaggtatt 31014243  T

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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 34036005 - 34036100
Alignment:
Q  190 tcctttgagggagtttgttcctaaaacagcagacaagatcaaatgcttgctcaatttggtgacagccaagctttctgataacaaacctattcctct 285  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||  || |||| ||||||||||    
T  34036005 tcctttgagggagtttgttccaaaaacagcagacaagatcaaatgcttgcccaatttggtgacagccaagctttctagtagcaaagctattcctct 34036100  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 6687596 - 6687718
Alignment:
Q  41 gacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgt 140  Q
    ||||||||||||||||||||| |||||| ||  ||||||||||||||||| ||||  |||  |||||  |||| || ||| ||||||||||||||||| |    
T  6687596 gacattcctcaaataaataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctctttt 6687695  T
Q  141 cctttcccattctagaggaattg 163  Q
    ||||||||||||| |||||||||    
T  6687696 cctttcccattctcgaggaattg 6687718  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 6687804 - 6687872
Alignment:
Q  219 cagacaagatcaaatgcttgctcaatttggtgacagccaagctttctgataacaaacctattcctctct 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  6687804 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctct 6687872  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 48828312 - 48828422
Alignment:
Q  44 attcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcct 143  Q
    ||||||| |||||||||||||   ||||||||||||||||| ||||||||||  |||  |||||  || |||| ||| |||||| |||||||||| ||||    
T  48828312 attcctcgaataaataatact---tcactactcaaaactcttcacttggataatgttcttttcataacccatacacacatcatcaactttctcttttcct 48828408  T
Q  144 ttcccattctagag 157  Q
    ||||||| ||||||    
T  48828409 ttcccatcctagag 48828422  T

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