View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_72 (Length: 282)
Name: NF1204_high_72
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 37385352 - 37385457
Alignment:
| Q |
30 |
gtaacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37385352 |
gtaacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatat |
37385451 |
T |
|
| Q |
130 |
tattac |
135 |
Q |
| |
|
|||||| |
|
|
| T |
37385452 |
tattac |
37385457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 37385484 - 37385594
Alignment:
| Q |
162 |
ttttgaacctcattgttgagcnnnnnnngagatgtttgatgtggtgagatgcgtaagtgttgcatcc-accatactgtaaacgagttacgtaggtaacaa |
260 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37385484 |
ttttgaacctcattgttgagctttttttgagatgtttgatgtggtgagatgtgtaagtgttgcatcccaccatactgtaaacgagttacgtaggtaacaa |
37385583 |
T |
|
| Q |
261 |
gttgtgttcat |
271 |
Q |
| |
|
||||||||||| |
|
|
| T |
37385584 |
gttgtgttcat |
37385594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 37377942 - 37378044
Alignment:
| Q |
32 |
aacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactattcatatatta |
131 |
Q |
| |
|
|||||| ||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| | ||||||||||||| |
|
|
| T |
37377942 |
aacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaagtagtttggcttcaa-attattcatatatta |
37378040 |
T |
|
| Q |
132 |
ttac |
135 |
Q |
| |
|
|||| |
|
|
| T |
37378041 |
ttac |
37378044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 37378094 - 37378158
Alignment:
| Q |
205 |
gtgagatgcgtaagtgttgcatcc-accatactgtaaacgagttacgtaggtaacaagttgtgtt |
268 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
37378094 |
gtgaggtgcgtaagtgttgcatcccaccatgctgtatacgagttacgtaggtaacaagttgtgtt |
37378158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 37362222 - 37362265
Alignment:
| Q |
66 |
gttcatggatgtgcactatttgttctacattgcaactagtttgg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37362222 |
gttcatggatgtgcactatttgttctaaattgcaagtagtttgg |
37362265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 37365839 - 37365796
Alignment:
| Q |
66 |
gttcatggatgtgcactatttgttctacattgcaactagtttgg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37365839 |
gttcatggatgtgcactatttgttctaaattgcaagtagtttgg |
37365796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 41227505 - 41227431
Alignment:
| Q |
30 |
gtaacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactag |
104 |
Q |
| |
|
|||||||| |||||||| ||||| | || ||||||||||||||||| || ||| |||||||| ||||||||||| |
|
|
| T |
41227505 |
gtaacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaactag |
41227431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University