View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_77 (Length: 265)
Name: NF1204_high_77
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 257
Target Start/End: Complemental strand, 29292994 - 29292779
Alignment:
| Q |
37 |
ctttgaaatttatactttaatgttttctagcatttgtttctttttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29292994 |
ctttgaaatttatactttaatgttttctagcatttgtttctttttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaat |
29292895 |
T |
|
| Q |
137 |
gaatttataagtgagagacatcattcactttataaagaattttcgtagggacaaattaaccgcaatttaaaatgtaagatgatatcaaaacgtgtaaaac |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
29292894 |
gaatttataagtgagagacatcattcactttataaagaattttcgtagggacaaattaaccgcaatttaaattgtaag-----atcaaaacgtgtaaaat |
29292800 |
T |
|
| Q |
237 |
attcattaggccattcatctc |
257 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
29292799 |
attcattaggccatttatctc |
29292779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University