View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_78 (Length: 264)
Name: NF1204_high_78
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 6127511 - 6127291
Alignment:
| Q |
15 |
aataatccatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgattgagttatatattgcta |
114 |
Q |
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| T |
6127511 |
aataatccatgagaaagaagttcctttatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgatttagttatatattgcta |
6127412 |
T |
|
| Q |
115 |
cggctaatcttgaacctacgccatttcaatggaaccagagggaattcttgaataatattgatataaaaattgccgtttcactaatttggaatttgaaata |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6127411 |
cggctaatcttgaacctacatcatttcaatggaaccagagggagttcttgaataatattgatataaaaattgccgtttcattaatttggaatttgaaata |
6127312 |
T |
|
| Q |
215 |
ataacaagcaaatgaaaaaat |
235 |
Q |
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||||||||||||||||||||| |
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| T |
6127311 |
ataacaagcaaatgaaaaaat |
6127291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 44398678 - 44398449
Alignment:
| Q |
7 |
gtgagatgaataatccatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgattgagttata |
106 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
44398678 |
gtgagaagaataatcgatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttctgatttagttata |
44398579 |
T |
|
| Q |
107 |
tattgctacggctaatcttgaacct-acgccatttcaatggaaccagagggaattcttgaataatattgatataaaaattgccgtttcactaatttggaa |
205 |
Q |
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| T |
44398578 |
tattgctacagctaatcttgaacctaacgccatttcaatggaatcagagggagttcttgaataatattgatataaaaattgccgtttcactaatttggaa |
44398479 |
T |
|
| Q |
206 |
tttgaaataataacaagcaaatgaaaaaat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
44398478 |
tttgaaataataacaagcaaatgaaaaaat |
44398449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 43811277 - 43811057
Alignment:
| Q |
7 |
gtgagatgaataatccatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgattgagttata |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43811277 |
gtgagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatccatcaccataataattttttgatttagttata |
43811178 |
T |
|
| Q |
107 |
tattgctacggctaatcttgaacct-acgccatttcaatggaaccagagggaattcttgaataatattgatataaaaattgccgtttcactaatttggaa |
205 |
Q |
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| T |
43811177 |
tattgctacggctaatcttgaacctaacgccatttcaatggaac---------ttcttgaataatattgatataaaaactgccgtttcactaatttggaa |
43811087 |
T |
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| Q |
206 |
tttgaaataataacaagcaaatgaaaaaat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
43811086 |
tttgaaataataacaagcaaatgaaaaaat |
43811057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 14659457 - 14659229
Alignment:
| Q |
7 |
gtgagatgaataatccatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgattgagttata |
106 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14659457 |
gtgagaagaataatccatgagaaagaaattcctctatttaagcttgggatcaatttcaactttaaatccatcaccataataattttttgatttggttata |
14659358 |
T |
|
| Q |
107 |
tattgctacggctaatcttgaacctacgccatttcaatggaaccagagggaattcttgaataatattgatataaaaattgccgtttcactaatttggaat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
14659357 |
tattgctacggctaatcttgaacctacgccatttcaatggaactagagggagttcttgaataatattgatataaaaattgccgtttcattaatttgaaat |
14659258 |
T |
|
| Q |
207 |
ttgaaataataacaagcaaatgaaaaaat |
235 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
14659257 |
ttgaaataataacaagcaaatgaaaaaat |
14659229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 38226096 - 38226167
Alignment:
| Q |
135 |
ccatttcaatggaaccagagggaattcttgaataatattgatataaaaattgccgtttcactaatttggaat |
206 |
Q |
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||||||||||||||| ||||| | || ||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
38226096 |
ccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttggaat |
38226167 |
T |
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