View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_high_87 (Length: 252)
Name: NF1204_high_87
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_87 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 28249129 - 28248968
Alignment:
| Q |
1 |
attttatatagattatggttcatggcgatgtttcttggaagttatgcaatgtttgttgtggttatgcttattgcaaagtcctttgattttgtaatgttta |
100 |
Q |
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| T |
28249129 |
attttatatagattatggttcatgacaatgtttgt-ggaagttatgcaatgtttgttgtggttctgcttattccaaagtcctttgattttgtaatgttta |
28249031 |
T |
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| Q |
101 |
atatactactgcgaataaatatatatttttatacgtatcggtgggattgacccataaaacaaa |
163 |
Q |
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| T |
28249030 |
atatactactgcgaataaatatatacttttatacgtatcagtgagattgacccatagaacaaa |
28248968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 28248371 - 28248319
Alignment:
| Q |
191 |
tggcgtaaatgcacttttaattcttctattttatcaaactcagaaagtataat |
243 |
Q |
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| T |
28248371 |
tggcgtaactgcacttttaattcttctattttatgaaactcagaaagtataat |
28248319 |
T |
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