View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_89 (Length: 251)
Name: NF1204_high_89
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_89 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 8759294 - 8759424
Alignment:
| Q |
1 |
tgtatcaaaggaaatgagttatgttacctatgatgaagggtaaggttctgaatccaccctttggatttgtaatgttaattagaggctcttcttcctcgtt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
8759294 |
tgtatcaaatgaaatgagttatgttacctatgatgaagggtaaggttctgaatccaccctttggatttctaatgttaattagaggctcttcttcttcgtt |
8759393 |
T |
|
| Q |
101 |
caccatattttccatgtttgaataaacaaaa |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
8759394 |
caccatatcttccatgtttgaataaacaaaa |
8759424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 8750826 - 8750891
Alignment:
| Q |
25 |
tacctatgatgaagggtaaggttctgaatccaccctttggatttgtaatgttaattagaggctctt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||| |
|
|
| T |
8750826 |
tacctatgatgaagggtaaggttctgaagccaccctttggatttgcattgctaattagaggctctt |
8750891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 8759424 - 8759467
Alignment:
| Q |
177 |
agaagtgagagtttgaaagttcaaaggttgacacaaacatatgt |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8759424 |
agaagtgagagttagaaagttcaaaggttgacacaaacatatgt |
8759467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 8767665 - 8767731
Alignment:
| Q |
24 |
ttacctatgatgaagggtaaggttctgaatccaccctttggatttgtaatgttaattagaggctctt |
90 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
8767665 |
ttacttatgatgaaaggtaaggttctgaagccaccctttgggtttgtaacactaattagaggctctt |
8767731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 8778293 - 8778342
Alignment:
| Q |
22 |
tgttacctatgatgaagggtaaggttctgaatccaccctttggatttgta |
71 |
Q |
| |
|
||||||||||||||||||| | |||||| || ||||||||||||||||| |
|
|
| T |
8778293 |
tgttacctatgatgaagggaagggttctaaagtcaccctttggatttgta |
8778342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University