View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1204_high_95 (Length: 249)
Name: NF1204_high_95
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_high_95 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49871614 - 49871376
Alignment:
| Q |
1 |
cttcttgcggctcctcagaacgttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacttgcaactgttccca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871614 |
cttcttgcggctcctcagaacgttaagcctaacgttgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacttgcaactgttccca |
49871515 |
T |
|
| Q |
101 |
agaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871514 |
agaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtga |
49871415 |
T |
|
| Q |
201 |
tggtcccaaaaagaccatatttactggtagcaacagcta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49871414 |
tggtcccaaaaagaccatatttactggtagcaaaagcta |
49871376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49865683 - 49865445
Alignment:
| Q |
1 |
cttcttgcggctcctcagaacgttaagcctaacattgttgttgcacaagatggtagtggtcaatttaagactttgactgaggcacttgcaactgttccca |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
49865683 |
cttctcgcggctcctgagaacgttaagcctaatgctgttgttgcacaagatggtagtggtcaatttaagacattgactgaggcacttgcactagttccca |
49865584 |
T |
|
| Q |
101 |
agaagaacaaagttccttttgttattcatgttaaggctggtatctataaggagtatgttgctctggataaccatagggaccatgttactattattggtga |
200 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
49865583 |
agaaaaaccaagttccttttgttattcatgttaaggctggtatctataaggagtatgtttctgtggataaagatagggaccatgttactattattggcga |
49865484 |
T |
|
| Q |
201 |
tggtcccaaaaagaccatatttactggtagcaacagcta |
239 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
49865483 |
tggtcccacaaagaccatatttactggcagcaaaagcta |
49865445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University