View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_1 (Length: 808)
Name: NF1204_low_1
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 78 - 779
Target Start/End: Complemental strand, 10309327 - 10308625
Alignment:
| Q |
78 |
agcaccacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgc |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309327 |
agcaccacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgc |
10309228 |
T |
|
| Q |
178 |
tctgatattacaattgacaagtaataaaattctggacttgttattcatcttaannnnnnnnncctt-cagtatatactgccacacgaacatgaaaagctc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
10309227 |
tctgatattacaattgacaagtaataaaattctggactttttattcatcttatttttttttttttttcagtatatactgccacacgaacatgaaaagctc |
10309128 |
T |
|
| Q |
277 |
tcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactg |
376 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309127 |
tcacaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactg |
10309028 |
T |
|
| Q |
377 |
ttaatgggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgacggtaagaactctg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10309027 |
ttaatgggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgatggtaagaactctg |
10308928 |
T |
|
| Q |
477 |
nnnnnnnnacactggacagttatgaaggtactggacgctctttatcattaaaacttttgcatcaactggaaggtcaaagcaatgattctgccaaggcaac |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10308927 |
ttttttttacactggacagttatgaaggtactggacgctctttatcattaaaacttttgcatcaactggaaggtcaaagcaacgattctgccaaggcaac |
10308828 |
T |
|
| Q |
577 |
agagggcatcgattctggtactaatttgcttctgtatatgtaaaagtcgttcaaaataaacaacatgcatgtcatgtactgttcagaaaggaaatacatt |
676 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308827 |
agagggcactgattctggtactaatttgcttctgtatatgtaaaagtcgttcaaaataaacaacatgcatgtcatgtactgttcagaaaggaaatacatt |
10308728 |
T |
|
| Q |
677 |
ctataccaactagagaaattgtgatattttgtttttcaacaatccatagtccattaaacgattttagtatataagctttttaagggctatgtgttattgt |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
10308727 |
ctataccaactagagaaattgtgatattttgtttttcaacaatccatagtccattaaacgattttaatatataagctttttaagggctgtgtgttattgt |
10308628 |
T |
|
| Q |
777 |
taa |
779 |
Q |
| |
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||| |
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|
| T |
10308627 |
taa |
10308625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 242 - 423
Target Start/End: Complemental strand, 38432172 - 38431990
Alignment:
| Q |
242 |
ttcagtatatactgccacacgaacatgaaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtcttt |
341 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||| ||||||||||| |
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| T |
38432172 |
ttcagtatatactgccacacgaacatgaaaagctttcgcaagttgaattattggttgttgatgaagcagctgctattccactgccgacagtgaagtcttt |
38432073 |
T |
|
| Q |
342 |
gcttggcccatatttggtcttcctgtcttctactgttaatgggtatgaccattgtttg-tttttgtgaaacattccatatatc |
423 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||||| |
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| T |
38432072 |
gcttggcccatatctggtcttcctgtcttccactgttaatgggtatgactggtgtttgcttttggtgaaactttccatatatc |
38431990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 495 - 595
Target Start/End: Original strand, 11191860 - 11191960
Alignment:
| Q |
495 |
gttatgaaggtactggacgctctttatcattaaaacttttgcatcaactggaaggtcaaagcaatgattctgccaaggcaacagagggcatcgattctgg |
594 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
11191860 |
gttatgaaggtattggacgctctttatcattaaaacttttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctgg |
11191959 |
T |
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| Q |
595 |
t |
595 |
Q |
| |
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| T |
11191960 |
t |
11191960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 11191789 - 11191838
Alignment:
| Q |
269 |
aaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctatt |
318 |
Q |
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|||||||||||||||||||| | ||||| |||||||||||||| |||||| |
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| T |
11191789 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
11191838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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