View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1204_low_101 (Length: 257)
Name: NF1204_low_101
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1204_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 29273786 - 29273638
Alignment:
| Q |
79 |
taggaagaagatggagaagttgagttaaactcacccaatccataattttccatgagtgcaatacaaagtctcactggcaaacaaatatcctgaaacaaat |
178 |
Q |
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| T |
29273786 |
taggaagaagatggagaagttgagttaaactcacccaatccataattttccatgagtgcaatacaaagtctcactgccaaacaaatatcctgaaacaaat |
29273687 |
T |
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| Q |
179 |
ttgattgtgaaggaaaattgaatgcacacaaccattatatacatcatca |
227 |
Q |
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| T |
29273686 |
ttgattgtgaaggaaaactgaatgcacacaaccattatatacatcatca |
29273638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 55860779 - 55860928
Alignment:
| Q |
79 |
taggaagaagatggagaagttga-gttaaactcacccaatccataattttccatgagtgcaatacaaagtctcactggcaaacaaatatcctgaaacaaa |
177 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
55860779 |
taggaagaagatggagaagttgacgttaaactcaccctatccttaattttccatgagtgcaatacaaagtctcactgccaaacaaaaattctgaaacaaa |
55860878 |
T |
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| Q |
178 |
tttgattgtgaaggaaaattgaatgcacacaaccattatatacatcatca |
227 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
55860879 |
tttgattgtgaaggaaaactgaatgcaaacaaccattatatacatcatca |
55860928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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