View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1204_low_109 (Length: 251)

Name: NF1204_low_109
Description: NF1204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1204_low_109
NF1204_low_109
[»] chr7 (2 HSPs)
chr7 (9-140)||(27510017-27510148)
chr7 (104-140)||(27510969-27511005)
[»] chr6 (1 HSPs)
chr6 (70-138)||(33702207-33702275)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 27510017 - 27510148
Alignment:
Q  9 gaagaatatcgcaaaatcctttattttagaatttaattcgagattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaat 108  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510017 gaagaaaatcgcaaaatcctttattttagaatttaattcgatattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaat 27510116  T
Q  109 gtttaacacagcaacactagtctatcaccatc 140  Q
    ||||||||||||||||||||||||||||||||    
T  27510117 gtttaacacagcaacactagtctatcaccatc 27510148  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 27510969 - 27511005
Alignment:
Q  104 ttaatgtttaacacagcaacactagtctatcaccatc 140  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  27510969 ttaatatttaacacagcaacaccagtctatcaccatc 27511005  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 33702207 - 33702275
Alignment:
Q  70 aaaaaagctaaattcattaattttcaagcagtcattaatgtttaacacagcaacactagtctatcacca 138  Q
    |||||| || ||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  33702207 aaaaaaacttaattcattagttttcagttagtcattaatgtttaacacagcaacactagtctatcacca 33702275  T

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